Gene annotation
Transcriptome id Sobic.004G193800.1
Synonym Sb04g024160
Functional annotation hydrolase, alpha/beta fold family domain containing protein, expressed
UniProt A0A1Z5RNE1
Pfam PF02775 PF12697 PF16582 PF13378 PF02776
Panther DB PTHR18968 PTHR18968:SF114
NCBI CDD KOG1223; Isochorismate synthase
KEGG Orthology K14759; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G68890 : magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
RAP-DB (Rice) LOC_Os02g37090.1 : hydrolase, alpha/beta fold family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020862
Brachypodium KQK00060
Barley HORVU6Hr1G048850.71 , HORVU6Hr1G048850.73 , HORVU6Hr1G048850.72 , HORVU6Hr1G048850.75 , HORVU6Hr1G048850.74 , HORVU6Hr1G048850.77 , HORVU6Hr1G048850.76 , HORVU6Hr1G048850.79 , HORVU6Hr1G048850.78 , HORVU6Hr1G048850.81 , HORVU6Hr1G048850.29 , HORVU6Hr1G048850.22 , HORVU6Hr1G048850.23 , HORVU6Hr1G048850.20 , HORVU6Hr1G048850.21 , HORVU6Hr1G048850.26 , HORVU6Hr1G048850.27 , HORVU6Hr1G048850.24 , HORVU6Hr1G048850.25 , HORVU6Hr1G048850.3 , HORVU6Hr1G048850.1 , HORVU6Hr1G048850.7 , HORVU6Hr1G048850.6 , HORVU6Hr1G048850.5 , HORVU6Hr1G048850.4 , HORVU6Hr1G048850.9 , HORVU6Hr1G048850.8 , HORVU6Hr1G048850.66 , HORVU6Hr1G048850.67 , HORVU6Hr1G048850.64 , HORVU6Hr1G048850.65 , HORVU6Hr1G048850.62 , HORVU6Hr1G048850.63 , HORVU6Hr1G048850.60 , HORVU6Hr1G048850.61 , HORVU6Hr1G048850.69 , HORVU6Hr1G048850.13 , HORVU6Hr1G048850.12 , HORVU6Hr1G048850.11 , HORVU6Hr1G048850.10 , HORVU6Hr1G048850.17 , HORVU6Hr1G048850.16 , HORVU6Hr1G048850.15 , HORVU6Hr1G048850.14 , HORVU6Hr1G048850.19 , HORVU6Hr1G048850.18 , HORVU6Hr1G048850.59 , HORVU6Hr1G048850.58 , HORVU6Hr1G048850.55 , HORVU6Hr1G048850.54 , HORVU6Hr1G048850.53 , HORVU6Hr1G048850.52 , HORVU6Hr1G048850.51 , HORVU6Hr1G048850.50 , HORVU6Hr1G048850.44 , HORVU6Hr1G048850.45 , HORVU6Hr1G048850.46 , HORVU6Hr1G048850.41 , HORVU6Hr1G048850.42 , HORVU6Hr1G048850.43 , HORVU6Hr1G048850.48 , HORVU6Hr1G048850.49 , HORVU6Hr1G048850.47 , HORVU6Hr1G048850.40 , HORVU6Hr1G048850.57 , HORVU6Hr1G048850.56 , HORVU6Hr1G048850.80 , HORVU6Hr1G048850.82 , HORVU6Hr1G048850.83 , HORVU6Hr1G048850.84 , HORVU6Hr1G048850.35 , HORVU6Hr1G048850.34 , HORVU6Hr1G048850.37 , HORVU6Hr1G048850.36 , HORVU6Hr1G048850.31 , HORVU6Hr1G048850.33 , HORVU6Hr1G048850.32 , HORVU6Hr1G048850.39 , HORVU6Hr1G048850.38
Wheat TraesCS6D02G188900 , TraesCS6A02G207500 , TraesCS6B02G219400 , TraesCS6B02G219300 , TraesCS6B02G219400 , TraesCS6B02G219500 , TraesCS6B02G219500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G185250 - -
2 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G424100 sulfotransferase domain containing protein, expressed -
4 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
5 Sobic.007G099500 hypothetical protein -
6 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
7 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
8 Sobic.010G208500 - -
9 Sobic.004G169501 - -
10 Sobic.009G059600 KIP1, putative, expressed -
11 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
12 Sobic.002G090400 polygalacturonase, putative, expressed -
13 Sobic.003G420201 - -
14 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
15 Sobic.004G286900 - -
16 Sobic.008G167300 NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.002G297800 growth regulating factor protein, putative, expressed -
18 Sobic.003G204000 expressed protein -
19 Sobic.004G164600 - -
20 Sobic.002G073300 - -


Gene co-expression network
sample Sobic004G193800 Sobic004G193800 Sobic003G185250 Sobic003G185250 Sobic004G193800--Sobic003G185250 Sobic004G016500 Sobic004G016500 Sobic004G193800--Sobic004G016500 Sobic003G424100 Sobic003G424100 Sobic004G193800--Sobic003G424100 Sobic008G068800 Sobic008G068800 Sobic004G193800--Sobic008G068800 Sobic007G099500 Sobic007G099500 Sobic004G193800--Sobic007G099500 Sobic003G023400 Sobic003G023400 Sobic004G193800--Sobic003G023400 Sobic004G240900 Sobic004G240900 Sobic004G193800--Sobic004G240900 Sobic010G208500 Sobic010G208500 Sobic004G193800--Sobic010G208500 Sobic004G169501 Sobic004G169501 Sobic004G193800--Sobic004G169501 Sobic003G185250--Sobic004G193800 Sobic001G045700 Sobic001G045700 Sobic003G185250--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic003G185250--Sobic002G060450 Sobic006G210200 Sobic006G210200 Sobic003G185250--Sobic006G210200 Sobic001G454301 Sobic001G454301 Sobic003G185250--Sobic001G454301 Sobic003G163100 Sobic003G163100 Sobic003G185250--Sobic003G163100 Sobic006G006500 Sobic006G006500 Sobic003G185250--Sobic006G006500 Sobic003G185250--Sobic003G023400 Sobic005G110523 Sobic005G110523 Sobic003G185250--Sobic005G110523 Sobic001G046600 Sobic001G046600 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G212800 Sobic004G212800 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic004G016500--Sobic001G479500 Sobic004G164600 Sobic004G164600 Sobic004G016500--Sobic004G164600 Sobic004G016500--Sobic003G424100 Sobic003G424100--Sobic004G164600 Sobic003G424100--Sobic001G046600 Sobic003G424100--Sobic004G212800 Sobic003G424100--Sobic004G240900 Sobic007G073400 Sobic007G073400 Sobic003G424100--Sobic007G073400 Sobic009G059600 Sobic009G059600 Sobic003G424100--Sobic009G059600 Sobic003G424100--Sobic007G099500 Sobic003G424100--Sobic004G016500 Sobic003G424100--Sobic008G068800 Sobic007G116400 Sobic007G116400 Sobic008G068800--Sobic007G116400 Sobic007G142050 Sobic007G142050 Sobic008G068800--Sobic007G142050 Sobic003G204000 Sobic003G204000 Sobic008G068800--Sobic003G204000 Sobic008G068800--Sobic004G169501 Sobic008G068800--Sobic009G059600 Sobic003G315332 Sobic003G315332 Sobic008G068800--Sobic003G315332 Sobic004G286900 Sobic004G286900 Sobic008G068800--Sobic004G286900 Sobic008G068800--Sobic003G424100 Sobic001G024200 Sobic001G024200 Sobic008G068800--Sobic001G024200 Sobic007G099500--Sobic009G059600 Sobic007G099500--Sobic004G164600 Sobic002G090400 Sobic002G090400 Sobic007G099500--Sobic002G090400 Sobic007G099500--Sobic007G073400 Sobic007G099500--Sobic003G424100 Sobic007G099500--Sobic004G240900 Sobic008G031350 Sobic008G031350 Sobic007G099500--Sobic008G031350 Sobic007G099500--Sobic004G212800 Sobic002G221700 Sobic002G221700 Sobic007G099500--Sobic002G221700 Sobic003G023400--Sobic004G193800 Sobic002G049000 Sobic002G049000 Sobic003G023400--Sobic002G049000 Sobic003G023400--Sobic006G210200 Sobic003G023400--Sobic003G185250 Sobic003G023400--Sobic002G090400 Sobic003G023400--Sobic008G068800 Sobic001G367100 Sobic001G367100 Sobic003G023400--Sobic001G367100 Sobic001G094000 Sobic001G094000 Sobic003G023400--Sobic001G094000 Sobic003G023400--Sobic003G163100 Sobic004G240900--Sobic003G424100 Sobic006G133600 Sobic006G133600 Sobic004G240900--Sobic006G133600 Sobic004G240900--Sobic001G046600 Sobic004G240900--Sobic007G099500 Sobic004G240900--Sobic004G016500 Sobic004G240900--Sobic009G059600 Sobic003G029300 Sobic003G029300 Sobic004G240900--Sobic003G029300 Sobic004G240900--Sobic004G193800 Sobic004G240900--Sobic004G164600 Sobic006G132200 Sobic006G132200 Sobic010G208500--Sobic006G132200 Sobic008G108900 Sobic008G108900 Sobic010G208500--Sobic008G108900 Sobic010G208500--Sobic003G424100 Sobic002G062300 Sobic002G062300 Sobic010G208500--Sobic002G062300 Sobic005G212600 Sobic005G212600 Sobic010G208500--Sobic005G212600 Sobic009G109101 Sobic009G109101 Sobic010G208500--Sobic009G109101 Sobic009G196700 Sobic009G196700 Sobic010G208500--Sobic009G196700 Sobic009G113600 Sobic009G113600 Sobic010G208500--Sobic009G113600 Sobic007G115000 Sobic007G115000 Sobic010G208500--Sobic007G115000 Sobic004G169501--Sobic003G315332 Sobic004G169501--Sobic007G142050 Sobic004G169501--Sobic008G068800 Sobic004G169501--Sobic007G116400 Sobic008G117200 Sobic008G117200 Sobic004G169501--Sobic008G117200 Sobic004G169501--Sobic003G204000 Sobic001G267233 Sobic001G267233 Sobic004G169501--Sobic001G267233 Sobic002G181450 Sobic002G181450 Sobic004G169501--Sobic002G181450 Sobic007G089600 Sobic007G089600 Sobic004G169501--Sobic007G089600
Octagon: transcription factors


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