Gene annotation
Transcriptome id Sobic.008G011300.1
Synonym Sb08g001060
Functional annotation GIY-YIG catalytic domain containing protein, putative, expressed
UniProt C5YQ83
Pfam PF01541
Panther DB PTHR20208 PTHR20208:SF13
NCBI CDD -
KEGG Orthology K15078; structure-specific endonuclease subunit SLX1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43210 : Excinuclease ABC, C subunit, N-terminal
RAP-DB (Rice) LOC_Os12g04934.1 : GIY-YIG catalytic domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053681
Brachypodium KQJ89585
Barley HORVU4Hr1G025850.10 , HORVU4Hr1G025850.11 , HORVU4Hr1G025850.1 , HORVU4Hr1G025850.2 , HORVU4Hr1G025850.3 , HORVU4Hr1G025850.4 , HORVU4Hr1G025850.5 , HORVU4Hr1G025850.6 , HORVU4Hr1G025850.7 , HORVU4Hr1G025850.8 , HORVU4Hr1G025850.9
Wheat TraesCS4A02G185100 , TraesCS4B02G133500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
2 Sobic.007G211800 kinase, pfkB family, putative, expressed -
3 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
4 Sobic.001G478600 uroporphyrinogen III synthase, putative, expressed K01719: hemD, uroporphyrinogen-III synthase
5 Sobic.001G063800 ML domain protein, putative, expressed -
6 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
7 Sobic.010G221600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
8 Sobic.002G189600 expressed protein -
9 Sobic.002G388000 SNARE associated Golgi protein, putative, expressed -
10 Sobic.001G250700 expressed protein -
11 Sobic.001G025800 pentatricopeptide, putative, expressed -
12 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
13 Sobic.004G162500 SAM domain family protein, expressed -
14 Sobic.002G072300 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
15 Sobic.006G225100 OsFBDUF17 - F-box and DUF domain containing protein, expressed -
16 Sobic.003G218801 - -
17 Sobic.002G014800 expressed protein -
18 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.009G160500 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase


Gene co-expression network
sample Sobic008G011300 Sobic008G011300 Sobic001G032200 Sobic001G032200 Sobic008G011300--Sobic001G032200 Sobic007G211800 Sobic007G211800 Sobic008G011300--Sobic007G211800 Sobic010G204900 Sobic010G204900 Sobic008G011300--Sobic010G204900 Sobic001G478600 Sobic001G478600 Sobic008G011300--Sobic001G478600 Sobic001G063800 Sobic001G063800 Sobic008G011300--Sobic001G063800 Sobic001G495400 Sobic001G495400 Sobic008G011300--Sobic001G495400 Sobic010G221600 Sobic010G221600 Sobic008G011300--Sobic010G221600 Sobic002G189600 Sobic002G189600 Sobic008G011300--Sobic002G189600 Sobic002G388000 Sobic002G388000 Sobic008G011300--Sobic002G388000 Sobic001G032200--Sobic008G011300 Sobic001G032200--Sobic010G204900 Sobic001G032200--Sobic007G211800 Sobic001G032200--Sobic001G495400 Sobic004G162500 Sobic004G162500 Sobic001G032200--Sobic004G162500 Sobic009G160500 Sobic009G160500 Sobic001G032200--Sobic009G160500 Sobic001G346600 Sobic001G346600 Sobic001G032200--Sobic001G346600 Sobic002G138300 Sobic002G138300 Sobic001G032200--Sobic002G138300 Sobic001G025800 Sobic001G025800 Sobic001G032200--Sobic001G025800 Sobic007G211800--Sobic001G032200 Sobic007G211800--Sobic008G011300 Sobic007G211800--Sobic001G025800 Sobic007G211800--Sobic010G204900 Sobic007G211800--Sobic001G495400 Sobic007G030800 Sobic007G030800 Sobic007G211800--Sobic007G030800 Sobic008G097600 Sobic008G097600 Sobic007G211800--Sobic008G097600 Sobic007G211800--Sobic010G221600 Sobic007G090537 Sobic007G090537 Sobic007G211800--Sobic007G090537 Sobic010G204900--Sobic001G032200 Sobic010G204900--Sobic001G025800 Sobic003G267500 Sobic003G267500 Sobic010G204900--Sobic003G267500 Sobic010G100800 Sobic010G100800 Sobic010G204900--Sobic010G100800 Sobic003G120300 Sobic003G120300 Sobic010G204900--Sobic003G120300 Sobic004G130300 Sobic004G130300 Sobic010G204900--Sobic004G130300 Sobic001G250700 Sobic001G250700 Sobic010G204900--Sobic001G250700 Sobic004G003900 Sobic004G003900 Sobic010G204900--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic010G204900--Sobic005G117300 Sobic001G433100 Sobic001G433100 Sobic001G478600--Sobic001G433100 Sobic001G478600--Sobic010G221600 Sobic006G155100 Sobic006G155100 Sobic001G478600--Sobic006G155100 Sobic008G090900 Sobic008G090900 Sobic001G478600--Sobic008G090900 Sobic001G478600--Sobic002G189600 Sobic001G478600--Sobic004G003900 Sobic001G478600--Sobic001G025800 Sobic001G003900 Sobic001G003900 Sobic001G478600--Sobic001G003900 Sobic001G478600--Sobic008G011300 Sobic004G175600 Sobic004G175600 Sobic001G063800--Sobic004G175600 Sobic001G063800--Sobic008G011300 Sobic003G218801 Sobic003G218801 Sobic001G063800--Sobic003G218801 Sobic001G296400 Sobic001G296400 Sobic001G063800--Sobic001G296400 Sobic001G063800--Sobic010G204900 Sobic001G063800--Sobic001G250700 Sobic003G265500 Sobic003G265500 Sobic001G063800--Sobic003G265500 Sobic001G063800--Sobic001G032200 Sobic002G072300 Sobic002G072300 Sobic001G063800--Sobic002G072300 Sobic004G097900 Sobic004G097900 Sobic001G495400--Sobic004G097900 Sobic002G386900 Sobic002G386900 Sobic001G495400--Sobic002G386900 Sobic002G292800 Sobic002G292800 Sobic001G495400--Sobic002G292800 Sobic001G495400--Sobic001G032200 Sobic006G170900 Sobic006G170900 Sobic001G495400--Sobic006G170900 Sobic002G122100 Sobic002G122100 Sobic001G495400--Sobic002G122100 Sobic004G106250 Sobic004G106250 Sobic001G495400--Sobic004G106250 Sobic001G417500 Sobic001G417500 Sobic001G495400--Sobic001G417500 Sobic003G124600 Sobic003G124600 Sobic001G495400--Sobic003G124600 Sobic010G221600--Sobic003G265500 Sobic001G543700 Sobic001G543700 Sobic010G221600--Sobic001G543700 Sobic010G221600--Sobic008G090900 Sobic004G214400 Sobic004G214400 Sobic010G221600--Sobic004G214400 Sobic010G221600--Sobic004G003900 Sobic010G221600--Sobic001G478600 Sobic010G221600--Sobic002G189600 Sobic004G208600 Sobic004G208600 Sobic010G221600--Sobic004G208600 Sobic003G292300 Sobic003G292300 Sobic010G221600--Sobic003G292300 Sobic002G189600--Sobic010G221600 Sobic007G026200 Sobic007G026200 Sobic002G189600--Sobic007G026200 Sobic002G189600--Sobic001G478600 Sobic002G189600--Sobic004G162500 Sobic002G189600--Sobic009G160500 Sobic002G189600--Sobic003G292300 Sobic002G189600--Sobic008G011300 Sobic001G441200 Sobic001G441200 Sobic002G189600--Sobic001G441200 Sobic007G211100 Sobic007G211100 Sobic002G189600--Sobic007G211100 Sobic009G156100 Sobic009G156100 Sobic002G388000--Sobic009G156100 Sobic005G023800 Sobic005G023800 Sobic002G388000--Sobic005G023800 Sobic002G388000--Sobic008G011300 Sobic008G116700 Sobic008G116700 Sobic002G388000--Sobic008G116700 Sobic005G111700 Sobic005G111700 Sobic002G388000--Sobic005G111700 Sobic003G272700 Sobic003G272700 Sobic002G388000--Sobic003G272700 Sobic009G107300 Sobic009G107300 Sobic002G388000--Sobic009G107300 Sobic001G464400 Sobic001G464400 Sobic002G388000--Sobic001G464400 Sobic010G068700 Sobic010G068700 Sobic002G388000--Sobic010G068700
Octagon: transcription factors


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