Gene annotation
Transcriptome id Sobic.007G206100.1
Synonym pde191, Sb07g027350
Functional annotation mTERF domain containing protein, expressed
UniProt C5YIN1
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF5
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT4G38160 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os08g40430.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030330
Brachypodium KQJ98968
Barley HORVU7Hr1G051550.11 , HORVU7Hr1G051550.10 , HORVU7Hr1G051550.5 , HORVU7Hr1G051550.4 , HORVU7Hr1G051550.7 , HORVU7Hr1G051550.6 , HORVU7Hr1G051550.1 , HORVU7Hr1G051550.3 , HORVU7Hr1G051550.2 , HORVU7Hr1G051550.9 , HORVU7Hr1G051550.8
Wheat TraesCS7D02G248600 , TraesCS7A02G250000 , TraesCS7A02G250000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G064400 expressed protein -
2 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
3 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
4 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G246800 pentatricopeptide, putative, expressed -
6 Sobic.001G142400 RIO1 family protein, expressed -
7 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -
8 Sobic.004G151900 - -
9 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
10 Sobic.004G208600 glycine-rich protein, putative, expressed -
11 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
12 Sobic.003G218801 - -
13 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
14 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
15 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
16 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
17 Sobic.005G022800 GTP binding protein, putative, expressed -
18 Sobic.007G090415 - -
19 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
20 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -


Gene co-expression network
sample Sobic007G206100 Sobic007G206100 Sobic002G064400 Sobic002G064400 Sobic007G206100--Sobic002G064400 Sobic001G236800 Sobic001G236800 Sobic007G206100--Sobic001G236800 Sobic008G008500 Sobic008G008500 Sobic007G206100--Sobic008G008500 Sobic002G190100 Sobic002G190100 Sobic007G206100--Sobic002G190100 Sobic004G246800 Sobic004G246800 Sobic007G206100--Sobic004G246800 Sobic001G142400 Sobic001G142400 Sobic007G206100--Sobic001G142400 Sobic003G042100 Sobic003G042100 Sobic007G206100--Sobic003G042100 Sobic004G151900 Sobic004G151900 Sobic007G206100--Sobic004G151900 Sobic001G215300 Sobic001G215300 Sobic007G206100--Sobic001G215300 Sobic002G064400--Sobic008G008500 Sobic002G064400--Sobic002G190100 Sobic002G064400--Sobic001G215300 Sobic002G064400--Sobic001G236800 Sobic009G083300 Sobic009G083300 Sobic002G064400--Sobic009G083300 Sobic002G064400--Sobic007G206100 Sobic002G242600 Sobic002G242600 Sobic002G064400--Sobic002G242600 Sobic002G064400--Sobic001G142400 Sobic004G015700 Sobic004G015700 Sobic002G064400--Sobic004G015700 Sobic001G236800--Sobic004G015700 Sobic001G236800--Sobic002G064400 Sobic001G236800--Sobic001G142400 Sobic001G236800--Sobic001G215300 Sobic001G236800--Sobic007G206100 Sobic001G236800--Sobic008G008500 Sobic001G236800--Sobic004G151900 Sobic001G236800--Sobic004G246800 Sobic010G157700 Sobic010G157700 Sobic001G236800--Sobic010G157700 Sobic008G008500--Sobic002G064400 Sobic008G008500--Sobic009G083300 Sobic007G123200 Sobic007G123200 Sobic008G008500--Sobic007G123200 Sobic008G130700 Sobic008G130700 Sobic008G008500--Sobic008G130700 Sobic008G008500--Sobic002G190100 Sobic007G090415 Sobic007G090415 Sobic008G008500--Sobic007G090415 Sobic008G008500--Sobic001G142400 Sobic003G071600 Sobic003G071600 Sobic008G008500--Sobic003G071600 Sobic006G060500 Sobic006G060500 Sobic008G008500--Sobic006G060500 Sobic006G025700 Sobic006G025700 Sobic002G190100--Sobic006G025700 Sobic006G263800 Sobic006G263800 Sobic002G190100--Sobic006G263800 Sobic002G190100--Sobic008G130700 Sobic002G190100--Sobic002G242600 Sobic001G027600 Sobic001G027600 Sobic002G190100--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic002G190100--Sobic004G044000 Sobic004G253800 Sobic004G253800 Sobic002G190100--Sobic004G253800 Sobic009G059100 Sobic009G059100 Sobic002G190100--Sobic009G059100 Sobic001G120000 Sobic001G120000 Sobic002G190100--Sobic001G120000 Sobic001G076200 Sobic001G076200 Sobic004G246800--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic004G246800--Sobic002G209600 Sobic008G131700 Sobic008G131700 Sobic004G246800--Sobic008G131700 Sobic008G021700 Sobic008G021700 Sobic004G246800--Sobic008G021700 Sobic005G022800 Sobic005G022800 Sobic004G246800--Sobic005G022800 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic001G142400--Sobic006G263800 Sobic005G084000 Sobic005G084000 Sobic001G142400--Sobic005G084000 Sobic001G142400--Sobic001G215300 Sobic001G142400--Sobic002G190100 Sobic001G142400--Sobic005G022800 Sobic007G201400 Sobic007G201400 Sobic001G142400--Sobic007G201400 Sobic001G142400--Sobic008G021700 Sobic001G142400--Sobic001G236800 Sobic002G140000 Sobic002G140000 Sobic001G142400--Sobic002G140000 Sobic001G061600 Sobic001G061600 Sobic003G042100--Sobic001G061600 Sobic003G042100--Sobic008G021700 Sobic003G042100--Sobic001G215300 Sobic003G042100--Sobic001G236800 Sobic004G193800 Sobic004G193800 Sobic003G042100--Sobic004G193800 Sobic003G042100--Sobic008G008500 Sobic003G029300 Sobic003G029300 Sobic003G042100--Sobic003G029300 Sobic009G251300 Sobic009G251300 Sobic003G042100--Sobic009G251300 Sobic007G154800 Sobic007G154800 Sobic003G042100--Sobic007G154800 Sobic004G151900--Sobic008G021700 Sobic004G151900--Sobic009G251300 Sobic004G151900--Sobic001G061600 Sobic004G151900--Sobic007G154800 Sobic004G151900--Sobic004G246800 Sobic007G066050 Sobic007G066050 Sobic004G151900--Sobic007G066050 Sobic004G151900--Sobic003G029300 Sobic004G151900--Sobic001G142400 Sobic009G064766 Sobic009G064766 Sobic004G151900--Sobic009G064766 Sobic004G109000 Sobic004G109000 Sobic001G215300--Sobic004G109000 Sobic001G215300--Sobic001G142400 Sobic001G215300--Sobic002G064400 Sobic001G215300--Sobic002G190100 Sobic001G215300--Sobic008G130700 Sobic001G215300--Sobic001G236800 Sobic001G188600 Sobic001G188600 Sobic001G215300--Sobic001G188600 Sobic001G215300--Sobic007G090415 Sobic006G114300 Sobic006G114300 Sobic001G215300--Sobic006G114300
Octagon: transcription factors


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