Gene annotation
Transcriptome id Sobic.002G189600.1
Synonym Sb02g023710, CDF1
Functional annotation expressed protein
UniProt A0A1W0W4W5
Pfam PF11833
Panther DB PTHR33372 PTHR33372:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23040 : Protein of unknown function (DUF3353)
RAP-DB (Rice) LOC_Os09g21250.1 : expressed protein
MaizeGDB (Corn) Zm00025a046834 , Zm00025a031042
Brachypodium KQJ90103 , KQJ98281 , KQJ98280
Barley HORVU5Hr1G059530.6 , HORVU5Hr1G059530.5 , HORVU5Hr1G059530.4 , HORVU5Hr1G059530.7 , HORVU5Hr1G059530.1 , HORVU5Hr1G059530.2 , HORVU5Hr1G059530.3
Wheat TraesCS5D02G205500 , TraesCS5D02G205500 , TraesCS5A02G199900 , TraesCS5A02G199900 , TraesCS5B02G198200 , TraesCS5B02G198200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G221600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
2 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
3 Sobic.001G478600 uroporphyrinogen III synthase, putative, expressed K01719: hemD, uroporphyrinogen-III synthase
4 Sobic.004G162500 SAM domain family protein, expressed -
5 Sobic.009G160500 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
6 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
7 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
8 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
9 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
10 Sobic.002G151000 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
11 Sobic.001G433100 expressed protein -
12 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
13 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
14 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
15 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
16 Sobic.006G155100 expressed protein -
17 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
18 Sobic.004G214400 tic20, putative, expressed -
19 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
20 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -


Gene co-expression network
sample Sobic002G189600 Sobic002G189600 Sobic010G221600 Sobic010G221600 Sobic002G189600--Sobic010G221600 Sobic007G026200 Sobic007G026200 Sobic002G189600--Sobic007G026200 Sobic001G478600 Sobic001G478600 Sobic002G189600--Sobic001G478600 Sobic004G162500 Sobic004G162500 Sobic002G189600--Sobic004G162500 Sobic009G160500 Sobic009G160500 Sobic002G189600--Sobic009G160500 Sobic003G292300 Sobic003G292300 Sobic002G189600--Sobic003G292300 Sobic008G011300 Sobic008G011300 Sobic002G189600--Sobic008G011300 Sobic001G441200 Sobic001G441200 Sobic002G189600--Sobic001G441200 Sobic007G211100 Sobic007G211100 Sobic002G189600--Sobic007G211100 Sobic003G265500 Sobic003G265500 Sobic010G221600--Sobic003G265500 Sobic001G543700 Sobic001G543700 Sobic010G221600--Sobic001G543700 Sobic008G090900 Sobic008G090900 Sobic010G221600--Sobic008G090900 Sobic004G214400 Sobic004G214400 Sobic010G221600--Sobic004G214400 Sobic004G003900 Sobic004G003900 Sobic010G221600--Sobic004G003900 Sobic010G221600--Sobic001G478600 Sobic010G221600--Sobic002G189600 Sobic004G208600 Sobic004G208600 Sobic010G221600--Sobic004G208600 Sobic010G221600--Sobic003G292300 Sobic001G069500 Sobic001G069500 Sobic007G026200--Sobic001G069500 Sobic007G026200--Sobic007G211100 Sobic001G188600 Sobic001G188600 Sobic007G026200--Sobic001G188600 Sobic004G109000 Sobic004G109000 Sobic007G026200--Sobic004G109000 Sobic007G026200--Sobic002G189600 Sobic006G281066 Sobic006G281066 Sobic007G026200--Sobic006G281066 Sobic010G012900 Sobic010G012900 Sobic007G026200--Sobic010G012900 Sobic001G357200 Sobic001G357200 Sobic007G026200--Sobic001G357200 Sobic004G296800 Sobic004G296800 Sobic007G026200--Sobic004G296800 Sobic001G433100 Sobic001G433100 Sobic001G478600--Sobic001G433100 Sobic001G478600--Sobic010G221600 Sobic006G155100 Sobic006G155100 Sobic001G478600--Sobic006G155100 Sobic001G478600--Sobic008G090900 Sobic001G478600--Sobic002G189600 Sobic001G478600--Sobic004G003900 Sobic001G025800 Sobic001G025800 Sobic001G478600--Sobic001G025800 Sobic001G003900 Sobic001G003900 Sobic001G478600--Sobic001G003900 Sobic001G478600--Sobic008G011300 Sobic006G086800 Sobic006G086800 Sobic004G162500--Sobic006G086800 Sobic001G032200 Sobic001G032200 Sobic004G162500--Sobic001G032200 Sobic004G162500--Sobic002G189600 Sobic003G044300 Sobic003G044300 Sobic004G162500--Sobic003G044300 Sobic004G162500--Sobic009G160500 Sobic002G138300 Sobic002G138300 Sobic004G162500--Sobic002G138300 Sobic004G162500--Sobic008G011300 Sobic008G130800 Sobic008G130800 Sobic004G162500--Sobic008G130800 Sobic003G392600 Sobic003G392600 Sobic004G162500--Sobic003G392600 Sobic002G386900 Sobic002G386900 Sobic009G160500--Sobic002G386900 Sobic009G160500--Sobic001G032200 Sobic009G160500--Sobic002G189600 Sobic002G151000 Sobic002G151000 Sobic009G160500--Sobic002G151000 Sobic009G160500--Sobic004G162500 Sobic003G304400 Sobic003G304400 Sobic009G160500--Sobic003G304400 Sobic003G113300 Sobic003G113300 Sobic009G160500--Sobic003G113300 Sobic002G398700 Sobic002G398700 Sobic009G160500--Sobic002G398700 Sobic001G495400 Sobic001G495400 Sobic009G160500--Sobic001G495400 Sobic005G110481 Sobic005G110481 Sobic003G292300--Sobic005G110481 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic007G090537 Sobic007G090537 Sobic003G292300--Sobic007G090537 Sobic009G001500 Sobic009G001500 Sobic003G292300--Sobic009G001500 Sobic003G295800 Sobic003G295800 Sobic003G292300--Sobic003G295800 Sobic003G225100 Sobic003G225100 Sobic003G292300--Sobic003G225100 Sobic003G383600 Sobic003G383600 Sobic003G292300--Sobic003G383600 Sobic007G013400 Sobic007G013400 Sobic003G292300--Sobic007G013400 Sobic008G011300--Sobic001G032200 Sobic007G211800 Sobic007G211800 Sobic008G011300--Sobic007G211800 Sobic010G204900 Sobic010G204900 Sobic008G011300--Sobic010G204900 Sobic008G011300--Sobic001G478600 Sobic001G063800 Sobic001G063800 Sobic008G011300--Sobic001G063800 Sobic008G011300--Sobic001G495400 Sobic008G011300--Sobic010G221600 Sobic008G011300--Sobic002G189600 Sobic002G388000 Sobic002G388000 Sobic008G011300--Sobic002G388000 Sobic006G232400 Sobic006G232400 Sobic001G441200--Sobic006G232400 Sobic003G165800 Sobic003G165800 Sobic001G441200--Sobic003G165800 Sobic001G441200--Sobic006G281066 Sobic001G441200--Sobic007G026200 Sobic001G441200--Sobic004G214400 Sobic001G441200--Sobic002G189600 Sobic002G141900 Sobic002G141900 Sobic001G441200--Sobic002G141900 Sobic004G070800 Sobic004G070800 Sobic001G441200--Sobic004G070800 Sobic002G140000 Sobic002G140000 Sobic001G441200--Sobic002G140000 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100
Octagon: transcription factors


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