Gene annotation
Transcriptome id Sobic.010G054000.6,Sobic.010G054000.1,Sobic.010G054000.3,Sobic.010G054000.5
Synonym Sb10g004720
Functional annotation dehydrodolichyl diphosphate synthase, putative, expressed
UniProt A0A194YHH4
Pfam PF01255
Panther DB PTHR10291 PTHR10291:SF0
NCBI CDD KOG1602; Cis-prenyltransferase
KEGG Orthology K11778; DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
Gene Ontology GO:0016765; transferase activity, transferring alkyl or aryl (other than methyl) groups


Orthologs (automatic annotation)
TAIR AT2G17570 : Undecaprenyl pyrophosphate synthetase family protein
RAP-DB (Rice) LOC_Os06g07120.1 : dehydrodolichyl diphosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a049845 , Zm00025a049844 , Zm00025a049856 , Zm00025a049865 , Zm00025a049843
Brachypodium PNT64707 , PNT64706 , PNT64705 , PNT64704 , PNT64703 , KQJ90487 , KQJ90486 , KQJ90485
Barley -
Wheat TraesCS7A02G130000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G183200 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
3 Sobic.007G069200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
4 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
5 Sobic.007G203000 RNA pseudouridine synthase, putative, expressed -
6 Sobic.004G295500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
7 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
8 Sobic.003G421201 - K00844: hexokinase
9 Sobic.010G059200 cystathionine gamma-synthase, putative, expressed K01760: cysteine-S-conjugate beta-lyase
10 Sobic.003G384300 NADP-dependent oxidoreductase, putative, expressed -
11 Sobic.001G434700 phosphomevalonate kinase, putative, expressed K00938: E2.7.4.2, phosphomevalonate kinase
12 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
13 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
14 Sobic.010G123300 expressed protein -
15 Sobic.001G460000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
16 Sobic.005G133900 TPR repeat region family protein, expressed -
17 Sobic.002G302900 calmodulin-binding heat-shock protein, putative, expressed -
18 Sobic.002G378700 PPR repeat containing protein, expressed -
19 Sobic.001G447600 squalene monooxygenase, putative, expressed K00511: SQLE, squalene monooxygenase
20 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase


Gene co-expression network
sample Sobic010G054000 Sobic010G054000 Sobic006G183200 Sobic006G183200 Sobic010G054000--Sobic006G183200 Sobic004G203500 Sobic004G203500 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic002G388600 Sobic002G388600 Sobic010G054000--Sobic002G388600 Sobic007G203000 Sobic007G203000 Sobic010G054000--Sobic007G203000 Sobic004G295500 Sobic004G295500 Sobic010G054000--Sobic004G295500 Sobic002G225000 Sobic002G225000 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G059200 Sobic010G059200 Sobic010G054000--Sobic010G059200 Sobic006G183200--Sobic010G054000 Sobic006G183200--Sobic004G203500 Sobic009G136700 Sobic009G136700 Sobic006G183200--Sobic009G136700 Sobic007G130800 Sobic007G130800 Sobic006G183200--Sobic007G130800 Sobic006G183200--Sobic002G388600 Sobic002G075800 Sobic002G075800 Sobic006G183200--Sobic002G075800 Sobic003G356000 Sobic003G356000 Sobic006G183200--Sobic003G356000 Sobic006G183200--Sobic004G295500 Sobic003G131800 Sobic003G131800 Sobic006G183200--Sobic003G131800 Sobic004G203500--Sobic004G295500 Sobic004G203500--Sobic010G054000 Sobic004G203500--Sobic007G203000 Sobic004G203500--Sobic006G183200 Sobic003G205300 Sobic003G205300 Sobic004G203500--Sobic003G205300 Sobic004G203500--Sobic002G388600 Sobic003G240100 Sobic003G240100 Sobic004G203500--Sobic003G240100 Sobic006G193500 Sobic006G193500 Sobic004G203500--Sobic006G193500 Sobic003G410700 Sobic003G410700 Sobic004G203500--Sobic003G410700 Sobic003G216500 Sobic003G216500 Sobic007G069200--Sobic003G216500 Sobic001G447600 Sobic001G447600 Sobic007G069200--Sobic001G447600 Sobic001G173500 Sobic001G173500 Sobic007G069200--Sobic001G173500 Sobic003G244200 Sobic003G244200 Sobic007G069200--Sobic003G244200 Sobic005G133900 Sobic005G133900 Sobic007G069200--Sobic005G133900 Sobic009G072000 Sobic009G072000 Sobic007G069200--Sobic009G072000 Sobic007G025400 Sobic007G025400 Sobic007G069200--Sobic007G025400 Sobic007G069200--Sobic010G054000 Sobic006G029800 Sobic006G029800 Sobic007G069200--Sobic006G029800 Sobic002G388600--Sobic002G225000 Sobic002G428900 Sobic002G428900 Sobic002G388600--Sobic002G428900 Sobic009G231100 Sobic009G231100 Sobic002G388600--Sobic009G231100 Sobic002G377300 Sobic002G377300 Sobic002G388600--Sobic002G377300 Sobic008G166050 Sobic008G166050 Sobic002G388600--Sobic008G166050 Sobic005G022000 Sobic005G022000 Sobic002G388600--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic002G388600--Sobic003G165800 Sobic007G050600 Sobic007G050600 Sobic002G388600--Sobic007G050600 Sobic002G388600--Sobic010G054000 Sobic007G203000--Sobic004G203500 Sobic007G203000--Sobic009G231100 Sobic001G371700 Sobic001G371700 Sobic007G203000--Sobic001G371700 Sobic001G217200 Sobic001G217200 Sobic007G203000--Sobic001G217200 Sobic005G031000 Sobic005G031000 Sobic007G203000--Sobic005G031000 Sobic001G361300 Sobic001G361300 Sobic007G203000--Sobic001G361300 Sobic007G203000--Sobic010G059200 Sobic007G203000--Sobic003G165800 Sobic008G125100 Sobic008G125100 Sobic007G203000--Sobic008G125100 Sobic004G295500--Sobic004G203500 Sobic004G295500--Sobic010G054000 Sobic004G295500--Sobic003G240100 Sobic004G295500--Sobic006G183200 Sobic003G094600 Sobic003G094600 Sobic004G295500--Sobic003G094600 Sobic003G389100 Sobic003G389100 Sobic004G295500--Sobic003G389100 Sobic002G193600 Sobic002G193600 Sobic004G295500--Sobic002G193600 Sobic009G026800 Sobic009G026800 Sobic004G295500--Sobic009G026800 Sobic004G295500--Sobic003G410700 Sobic002G225000--Sobic009G231100 Sobic003G078300 Sobic003G078300 Sobic002G225000--Sobic003G078300 Sobic002G225000--Sobic002G377300 Sobic001G379100 Sobic001G379100 Sobic002G225000--Sobic001G379100 Sobic010G165100 Sobic010G165100 Sobic002G225000--Sobic010G165100 Sobic003G148400 Sobic003G148400 Sobic002G225000--Sobic003G148400 Sobic003G223000 Sobic003G223000 Sobic002G225000--Sobic003G223000 Sobic002G225000--Sobic002G388600 Sobic002G078000 Sobic002G078000 Sobic002G225000--Sobic002G078000 Sobic002G257200 Sobic002G257200 Sobic003G421201--Sobic002G257200 Sobic005G036800 Sobic005G036800 Sobic003G421201--Sobic005G036800 Sobic003G384300 Sobic003G384300 Sobic003G421201--Sobic003G384300 Sobic002G390300 Sobic002G390300 Sobic003G421201--Sobic002G390300 Sobic004G279100 Sobic004G279100 Sobic003G421201--Sobic004G279100 Sobic009G015700 Sobic009G015700 Sobic003G421201--Sobic009G015700 Sobic003G421201--Sobic010G054000 Sobic001G422700 Sobic001G422700 Sobic003G421201--Sobic001G422700 Sobic003G316700 Sobic003G316700 Sobic003G421201--Sobic003G316700 Sobic009G124000 Sobic009G124000 Sobic010G059200--Sobic009G124000 Sobic010G059200--Sobic003G165800 Sobic004G124100 Sobic004G124100 Sobic010G059200--Sobic004G124100 Sobic003G420900 Sobic003G420900 Sobic010G059200--Sobic003G420900 Sobic010G123300 Sobic010G123300 Sobic010G059200--Sobic010G123300 Sobic002G301200 Sobic002G301200 Sobic010G059200--Sobic002G301200 Sobic004G296800 Sobic004G296800 Sobic010G059200--Sobic004G296800 Sobic001G376700 Sobic001G376700 Sobic010G059200--Sobic001G376700 Sobic001G408800 Sobic001G408800 Sobic010G059200--Sobic001G408800
Octagon: transcription factors


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