Gene annotation
Transcriptome id Sobic.002G378700.1
Synonym Sb02g039560
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1W0W7A1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF733
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28010 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g42880.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a015233
Brachypodium PNT74740
Barley HORVU2Hr1G030150.9 , HORVU2Hr1G030150.8 , HORVU2Hr1G030150.5 , HORVU2Hr1G030150.4 , HORVU2Hr1G030150.7 , HORVU2Hr1G030150.6 , HORVU2Hr1G030150.1 , HORVU2Hr1G030150.3 , HORVU2Hr1G030150.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279100 CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.002G302900 calmodulin-binding heat-shock protein, putative, expressed -
3 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
4 Sobic.010G090301 - -
5 Sobic.001G057100 plant-specific domain TIGR01615 family protein, expressed -
6 Sobic.010G186700 glycosyl hydrolases family 17, putative, expressed -
7 Sobic.002G148300 - -
8 Sobic.010G118100 protein kinase, putative, expressed -
9 Sobic.008G125900 drought induced 19 protein, putative, expressed -
10 Sobic.003G121800 CRAL/TRIO domain containing protein, expressed -
11 Sobic.005G175100 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
12 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
13 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
14 Sobic.009G101300 phox domain-containing protein, putative, expressed -
15 Sobic.004G016300 PPR repeat containing protein, expressed -
16 Sobic.003G384300 NADP-dependent oxidoreductase, putative, expressed -
17 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
18 Sobic.002G408300 OsFBT11 - F-box and tubby domain containing protein, expressed -
19 Sobic.002G270800 amino acid transporter, putative, expressed -
20 Sobic.001G503400 expressed protein -


Gene co-expression network
sample Sobic002G378700 Sobic002G378700 Sobic004G279100 Sobic004G279100 Sobic002G378700--Sobic004G279100 Sobic002G302900 Sobic002G302900 Sobic002G378700--Sobic002G302900 Sobic010G054000 Sobic010G054000 Sobic002G378700--Sobic010G054000 Sobic010G090301 Sobic010G090301 Sobic002G378700--Sobic010G090301 Sobic001G057100 Sobic001G057100 Sobic002G378700--Sobic001G057100 Sobic010G186700 Sobic010G186700 Sobic002G378700--Sobic010G186700 Sobic002G148300 Sobic002G148300 Sobic002G378700--Sobic002G148300 Sobic010G118100 Sobic010G118100 Sobic002G378700--Sobic010G118100 Sobic008G125900 Sobic008G125900 Sobic002G378700--Sobic008G125900 Sobic003G113800 Sobic003G113800 Sobic004G279100--Sobic003G113800 Sobic006G156300 Sobic006G156300 Sobic004G279100--Sobic006G156300 Sobic002G134600 Sobic002G134600 Sobic004G279100--Sobic002G134600 Sobic002G235300 Sobic002G235300 Sobic004G279100--Sobic002G235300 Sobic010G009800 Sobic010G009800 Sobic004G279100--Sobic010G009800 Sobic003G316700 Sobic003G316700 Sobic004G279100--Sobic003G316700 Sobic007G165900 Sobic007G165900 Sobic004G279100--Sobic007G165900 Sobic005G036800 Sobic005G036800 Sobic004G279100--Sobic005G036800 Sobic002G257200 Sobic002G257200 Sobic004G279100--Sobic002G257200 Sobic006G267600 Sobic006G267600 Sobic002G302900--Sobic006G267600 Sobic002G052700 Sobic002G052700 Sobic002G302900--Sobic002G052700 Sobic002G039800 Sobic002G039800 Sobic002G302900--Sobic002G039800 Sobic001G051700 Sobic001G051700 Sobic002G302900--Sobic001G051700 Sobic001G384000 Sobic001G384000 Sobic002G302900--Sobic001G384000 Sobic002G048700 Sobic002G048700 Sobic002G302900--Sobic002G048700 Sobic007G168300 Sobic007G168300 Sobic002G302900--Sobic007G168300 Sobic003G042400 Sobic003G042400 Sobic002G302900--Sobic003G042400 Sobic002G302900--Sobic010G186700 Sobic006G183200 Sobic006G183200 Sobic010G054000--Sobic006G183200 Sobic004G203500 Sobic004G203500 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic002G388600 Sobic002G388600 Sobic010G054000--Sobic002G388600 Sobic007G203000 Sobic007G203000 Sobic010G054000--Sobic007G203000 Sobic004G295500 Sobic004G295500 Sobic010G054000--Sobic004G295500 Sobic002G225000 Sobic002G225000 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G059200 Sobic010G059200 Sobic010G054000--Sobic010G059200 Sobic002G417300 Sobic002G417300 Sobic010G090301--Sobic002G417300 Sobic004G276200 Sobic004G276200 Sobic010G090301--Sobic004G276200 Sobic004G323400 Sobic004G323400 Sobic010G090301--Sobic004G323400 Sobic009G183101 Sobic009G183101 Sobic010G090301--Sobic009G183101 Sobic001G426800 Sobic001G426800 Sobic010G090301--Sobic001G426800 Sobic002G321300 Sobic002G321300 Sobic010G090301--Sobic002G321300 Sobic003G339700 Sobic003G339700 Sobic010G090301--Sobic003G339700 Sobic008G014200 Sobic008G014200 Sobic010G090301--Sobic008G014200 Sobic007G146400 Sobic007G146400 Sobic010G090301--Sobic007G146400 Sobic004G097200 Sobic004G097200 Sobic001G057100--Sobic004G097200 Sobic009G245000 Sobic009G245000 Sobic001G057100--Sobic009G245000 Sobic009G231800 Sobic009G231800 Sobic001G057100--Sobic009G231800 Sobic003G288800 Sobic003G288800 Sobic001G057100--Sobic003G288800 Sobic005G132000 Sobic005G132000 Sobic001G057100--Sobic005G132000 Sobic009G040400 Sobic009G040400 Sobic001G057100--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic001G057100--Sobic008G002400 Sobic004G125800 Sobic004G125800 Sobic001G057100--Sobic004G125800 Sobic003G277400 Sobic003G277400 Sobic001G057100--Sobic003G277400 Sobic003G298600 Sobic003G298600 Sobic010G186700--Sobic003G298600 Sobic010G186700--Sobic003G339700 Sobic001G361300 Sobic001G361300 Sobic010G186700--Sobic001G361300 Sobic001G178300 Sobic001G178300 Sobic010G186700--Sobic001G178300 Sobic004G131800 Sobic004G131800 Sobic010G186700--Sobic004G131800 Sobic006G066800 Sobic006G066800 Sobic010G186700--Sobic006G066800 Sobic001G057700 Sobic001G057700 Sobic010G186700--Sobic001G057700 Sobic010G186700--Sobic007G146400 Sobic001G466900 Sobic001G466900 Sobic010G186700--Sobic001G466900 Sobic001G503400 Sobic001G503400 Sobic002G148300--Sobic001G503400 Sobic002G272600 Sobic002G272600 Sobic002G148300--Sobic002G272600 Sobic002G143900 Sobic002G143900 Sobic002G148300--Sobic002G143900 Sobic001G119700 Sobic001G119700 Sobic002G148300--Sobic001G119700 Sobic007G162800 Sobic007G162800 Sobic002G148300--Sobic007G162800 Sobic010G219100 Sobic010G219100 Sobic002G148300--Sobic010G219100 Sobic009G193850 Sobic009G193850 Sobic002G148300--Sobic009G193850 Sobic005G010500 Sobic005G010500 Sobic002G148300--Sobic005G010500 Sobic002G180000 Sobic002G180000 Sobic002G148300--Sobic002G180000 Sobic004G253900 Sobic004G253900 Sobic010G118100--Sobic004G253900 Sobic005G175300 Sobic005G175300 Sobic010G118100--Sobic005G175300 Sobic006G261300 Sobic006G261300 Sobic010G118100--Sobic006G261300 Sobic010G009400 Sobic010G009400 Sobic010G118100--Sobic010G009400 Sobic004G283400 Sobic004G283400 Sobic010G118100--Sobic004G283400 Sobic009G190800 Sobic009G190800 Sobic010G118100--Sobic009G190800 Sobic002G431600 Sobic002G431600 Sobic010G118100--Sobic002G431600 Sobic010G185600 Sobic010G185600 Sobic010G118100--Sobic010G185600 Sobic003G359900 Sobic003G359900 Sobic010G118100--Sobic003G359900 Sobic004G212700 Sobic004G212700 Sobic008G125900--Sobic004G212700 Sobic010G015900 Sobic010G015900 Sobic008G125900--Sobic010G015900 Sobic001G119900 Sobic001G119900 Sobic008G125900--Sobic001G119900 Sobic002G202000 Sobic002G202000 Sobic008G125900--Sobic002G202000 Sobic003G040200 Sobic003G040200 Sobic008G125900--Sobic003G040200 Sobic004G237200 Sobic004G237200 Sobic008G125900--Sobic004G237200 Sobic010G154000 Sobic010G154000 Sobic008G125900--Sobic010G154000 Sobic009G155250 Sobic009G155250 Sobic008G125900--Sobic009G155250 Sobic008G125900--Sobic003G113800
Octagon: transcription factors


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