Gene annotation
Transcriptome id Sobic.004G203500.2,Sobic.004G203500.1
Synonym ATARP3, Sb04g024980, ARP3, DIS1
Functional annotation actin, putative, expressed
UniProt A0A194YRV0 , A0A194YQP8
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF31
NCBI CDD -
KEGG Orthology K18584; ACTR3, actin-related protein 3
Gene Ontology GO:0007015; actin filament organization GO:0005885Arp2/3 protein complex GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G13180 : Actin-like ATPase superfamily protein
RAP-DB (Rice) LOC_Os02g38340.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a021295 , Zm00025a037502 , Zm00025a031854
Brachypodium KQK00179
Barley HORVU6Hr1G053910.18 , HORVU6Hr1G053910.19 , HORVU6Hr1G053910.14 , HORVU6Hr1G053910.15 , HORVU6Hr1G053910.16 , HORVU6Hr1G053910.17 , HORVU6Hr1G053910.10 , HORVU6Hr1G053910.11 , HORVU6Hr1G053910.13 , HORVU6Hr1G053910.4 , HORVU6Hr1G053910.5 , HORVU6Hr1G053910.2 , HORVU6Hr1G053910.3 , HORVU6Hr1G053910.8 , HORVU6Hr1G053910.9
Wheat TraesCS6A02G211000 , TraesCS6A02G211000 , TraesCS6A02G211000 , TraesCS6B02G240500 , TraesCS6B02G240500 , TraesCS6D02G194100 , TraesCS6D02G194100
Populus -


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cDNA sequences
Sobic.004G203500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G295500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
3 Sobic.007G203000 RNA pseudouridine synthase, putative, expressed -
4 Sobic.006G183200 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.003G205300 DUF581 domain containing protein, expressed -
6 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
7 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G410700 exostosin family domain containing protein, expressed -
10 Sobic.005G084900 OsDegp12 - Putative Deg protease homologue, expressed -
11 Sobic.003G049600 CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.003G362300 expressed protein -
13 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
14 Sobic.004G296200 inactive receptor kinase At2g26730 precursor, putative, expressed -
15 Sobic.008G029300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
16 Sobic.002G347900 GDP-fucose protein-O-fucosyltransferase 2, putative, expressed K03691: peptide-O-fucosyltransferase
17 Sobic.002G193600 endoglucanase, putative, expressed -
18 Sobic.001G460000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
19 Sobic.003G119900 inositol-1-monophosphatase, putative, expressed K18649: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase
20 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)


Gene co-expression network
sample Sobic004G203500 Sobic004G203500 Sobic004G295500 Sobic004G295500 Sobic004G203500--Sobic004G295500 Sobic010G054000 Sobic010G054000 Sobic004G203500--Sobic010G054000 Sobic007G203000 Sobic007G203000 Sobic004G203500--Sobic007G203000 Sobic006G183200 Sobic006G183200 Sobic004G203500--Sobic006G183200 Sobic003G205300 Sobic003G205300 Sobic004G203500--Sobic003G205300 Sobic002G388600 Sobic002G388600 Sobic004G203500--Sobic002G388600 Sobic003G240100 Sobic003G240100 Sobic004G203500--Sobic003G240100 Sobic006G193500 Sobic006G193500 Sobic004G203500--Sobic006G193500 Sobic003G410700 Sobic003G410700 Sobic004G203500--Sobic003G410700 Sobic004G295500--Sobic004G203500 Sobic004G295500--Sobic010G054000 Sobic004G295500--Sobic003G240100 Sobic004G295500--Sobic006G183200 Sobic003G094600 Sobic003G094600 Sobic004G295500--Sobic003G094600 Sobic003G389100 Sobic003G389100 Sobic004G295500--Sobic003G389100 Sobic002G193600 Sobic002G193600 Sobic004G295500--Sobic002G193600 Sobic009G026800 Sobic009G026800 Sobic004G295500--Sobic009G026800 Sobic004G295500--Sobic003G410700 Sobic010G054000--Sobic006G183200 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic010G054000--Sobic002G388600 Sobic010G054000--Sobic007G203000 Sobic010G054000--Sobic004G295500 Sobic002G225000 Sobic002G225000 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G059200 Sobic010G059200 Sobic010G054000--Sobic010G059200 Sobic007G203000--Sobic004G203500 Sobic009G231100 Sobic009G231100 Sobic007G203000--Sobic009G231100 Sobic001G371700 Sobic001G371700 Sobic007G203000--Sobic001G371700 Sobic001G217200 Sobic001G217200 Sobic007G203000--Sobic001G217200 Sobic005G031000 Sobic005G031000 Sobic007G203000--Sobic005G031000 Sobic001G361300 Sobic001G361300 Sobic007G203000--Sobic001G361300 Sobic007G203000--Sobic010G059200 Sobic003G165800 Sobic003G165800 Sobic007G203000--Sobic003G165800 Sobic008G125100 Sobic008G125100 Sobic007G203000--Sobic008G125100 Sobic006G183200--Sobic010G054000 Sobic006G183200--Sobic004G203500 Sobic009G136700 Sobic009G136700 Sobic006G183200--Sobic009G136700 Sobic007G130800 Sobic007G130800 Sobic006G183200--Sobic007G130800 Sobic006G183200--Sobic002G388600 Sobic002G075800 Sobic002G075800 Sobic006G183200--Sobic002G075800 Sobic003G356000 Sobic003G356000 Sobic006G183200--Sobic003G356000 Sobic006G183200--Sobic004G295500 Sobic003G131800 Sobic003G131800 Sobic006G183200--Sobic003G131800 Sobic009G061000 Sobic009G061000 Sobic003G205300--Sobic009G061000 Sobic010G118300 Sobic010G118300 Sobic003G205300--Sobic010G118300 Sobic001G159800 Sobic001G159800 Sobic003G205300--Sobic001G159800 Sobic003G051100 Sobic003G051100 Sobic003G205300--Sobic003G051100 Sobic002G033700 Sobic002G033700 Sobic003G205300--Sobic002G033700 Sobic006G184100 Sobic006G184100 Sobic003G205300--Sobic006G184100 Sobic003G205300--Sobic004G203500 Sobic002G142700 Sobic002G142700 Sobic003G205300--Sobic002G142700 Sobic002G297600 Sobic002G297600 Sobic003G205300--Sobic002G297600 Sobic002G388600--Sobic002G225000 Sobic002G428900 Sobic002G428900 Sobic002G388600--Sobic002G428900 Sobic002G388600--Sobic009G231100 Sobic002G377300 Sobic002G377300 Sobic002G388600--Sobic002G377300 Sobic008G166050 Sobic008G166050 Sobic002G388600--Sobic008G166050 Sobic005G022000 Sobic005G022000 Sobic002G388600--Sobic005G022000 Sobic002G388600--Sobic003G165800 Sobic007G050600 Sobic007G050600 Sobic002G388600--Sobic007G050600 Sobic002G388600--Sobic010G054000 Sobic002G253900 Sobic002G253900 Sobic003G240100--Sobic002G253900 Sobic002G006100 Sobic002G006100 Sobic003G240100--Sobic002G006100 Sobic001G382400 Sobic001G382400 Sobic003G240100--Sobic001G382400 Sobic003G217500 Sobic003G217500 Sobic003G240100--Sobic003G217500 Sobic001G123100 Sobic001G123100 Sobic003G240100--Sobic001G123100 Sobic001G369800 Sobic001G369800 Sobic003G240100--Sobic001G369800 Sobic008G026400 Sobic008G026400 Sobic003G240100--Sobic008G026400 Sobic009G254000 Sobic009G254000 Sobic003G240100--Sobic009G254000 Sobic004G145300 Sobic004G145300 Sobic003G240100--Sobic004G145300 Sobic002G155100 Sobic002G155100 Sobic006G193500--Sobic002G155100 Sobic008G101900 Sobic008G101900 Sobic006G193500--Sobic008G101900 Sobic001G199500 Sobic001G199500 Sobic006G193500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic006G193500--Sobic003G102700 Sobic010G141600 Sobic010G141600 Sobic006G193500--Sobic010G141600 Sobic003G223000 Sobic003G223000 Sobic006G193500--Sobic003G223000 Sobic005G013300 Sobic005G013300 Sobic006G193500--Sobic005G013300 Sobic006G084300 Sobic006G084300 Sobic006G193500--Sobic006G084300 Sobic001G425700 Sobic001G425700 Sobic006G193500--Sobic001G425700 Sobic004G262600 Sobic004G262600 Sobic003G410700--Sobic004G262600 Sobic004G261200 Sobic004G261200 Sobic003G410700--Sobic004G261200 Sobic009G194200 Sobic009G194200 Sobic003G410700--Sobic009G194200 Sobic003G410700--Sobic003G389100 Sobic004G296200 Sobic004G296200 Sobic003G410700--Sobic004G296200 Sobic003G410700--Sobic003G094600 Sobic001G440500 Sobic001G440500 Sobic003G410700--Sobic001G440500 Sobic003G223900 Sobic003G223900 Sobic003G410700--Sobic003G223900 Sobic001G436100 Sobic001G436100 Sobic003G410700--Sobic001G436100
Octagon: transcription factors


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