Gene annotation
Transcriptome id Sobic.010G141600.1
Synonym FDH, Sb10g016920
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt C5Z2Z6
Pfam PF00389 PF02826
Panther DB PTHR10996 PTHR10996:SF171
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K00122; formate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G14780 : formate dehydrogenase
RAP-DB (Rice) LOC_Os06g29180.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021755 , Zm00025a050714 , Zm00025a033181 , Zm00025a053935 , Zm00025a051229 , Zm00025a017773 , Zm00025a007717
Brachypodium KQK18397
Barley HORVU7Hr1G047700.3 , HORVU7Hr1G047700.2 , HORVU7Hr1G047700.1 , HORVU7Hr1G047700.4
Wheat TraesCS7A02G232200 , TraesCS7A02G232200 , TraesCS7D02G232300 , TraesCS4D02G007200 , TraesCS4B02G066400 , TraesCS7B02G130600 , TraesCS7B02G130600 , TraesCS4D02G007200 , TraesCS7D02G232300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G141600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
2 Sobic.002G208400 regulator protein, putative, expressed -
3 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
4 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
6 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
7 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
8 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
9 Sobic.002G263200 expressed protein -
10 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
11 Sobic.008G115600 RNA polymerase Rpb7, N-terminal domain containing protein, expressed -
12 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
13 Sobic.003G049600 CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
15 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
16 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
17 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
18 Sobic.009G057200 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.006G032600 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
20 Sobic.008G162100 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase


Gene co-expression network
sample Sobic010G141600 Sobic010G141600 Sobic009G030400 Sobic009G030400 Sobic010G141600--Sobic009G030400 Sobic002G208400 Sobic002G208400 Sobic010G141600--Sobic002G208400 Sobic009G002000 Sobic009G002000 Sobic010G141600--Sobic009G002000 Sobic006G193500 Sobic006G193500 Sobic010G141600--Sobic006G193500 Sobic001G373000 Sobic001G373000 Sobic010G141600--Sobic001G373000 Sobic001G115500 Sobic001G115500 Sobic010G141600--Sobic001G115500 Sobic001G013300 Sobic001G013300 Sobic010G141600--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic010G141600--Sobic009G113100 Sobic002G263200 Sobic002G263200 Sobic010G141600--Sobic002G263200 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic002G142700 Sobic002G142700 Sobic002G208400--Sobic002G142700 Sobic002G208400--Sobic001G115500 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G102900 Sobic009G102900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500 Sobic002G155100 Sobic002G155100 Sobic006G193500--Sobic002G155100 Sobic008G101900 Sobic008G101900 Sobic006G193500--Sobic008G101900 Sobic001G199500 Sobic001G199500 Sobic006G193500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic006G193500--Sobic003G102700 Sobic006G193500--Sobic010G141600 Sobic003G223000 Sobic003G223000 Sobic006G193500--Sobic003G223000 Sobic005G013300 Sobic005G013300 Sobic006G193500--Sobic005G013300 Sobic006G084300 Sobic006G084300 Sobic006G193500--Sobic006G084300 Sobic001G425700 Sobic001G425700 Sobic006G193500--Sobic001G425700 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G115500--Sobic001G373000 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic009G113100--Sobic001G004100 Sobic009G113100--Sobic002G208400 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic002G263200--Sobic001G013300 Sobic002G263200--Sobic001G346900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.