Gene annotation
Transcriptome id Sobic.003G049600.2
Synonym CESA1, AtCESA1, RSW1
Functional annotation CESA1 - cellulose synthase, expressed
UniProt A0A1B6Q1D8
Pfam PF13632 PF14569
Panther DB PTHR13301 PTHR13301:SF33
NCBI CDD KOG3990; Uncharacterized conserved protein
KEGG Orthology K10999; cellulose synthase A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32410 : cellulose synthase 1
RAP-DB (Rice) LOC_Os05g08370.1 : CESA1 - cellulose synthase, expressed
MaizeGDB (Corn) Zm00025a053072 , Zm00025a036849 , Zm00025a043049 , Zm00025a023232
Brachypodium KQK07271
Barley HORVU0Hr1G038120.3 , HORVU0Hr1G038120.1 , HORVU0Hr1G038120.6 , HORVU0Hr1G038120.7 , HORVU0Hr1G038120.4 , HORVU0Hr1G038120.5 , HORVU0Hr1G038120.8 , HORVU0Hr1G038120.9 , HORVU6Hr1G050750.1 , HORVU6Hr1G050750.3 , HORVU6Hr1G050750.2 , HORVU6Hr1G050750.5 , HORVU6Hr1G050750.4 , HORVU6Hr1G050750.7 , HORVU6Hr1G050750.6 , HORVU6Hr1G050750.9 , HORVU6Hr1G050750.8 , HORVU6Hr1G050750.20 , HORVU6Hr1G050750.21 , HORVU6Hr1G050750.22 , HORVU1Hr1G026320.1 , HORVU6Hr1G050750.15 , HORVU6Hr1G050750.14 , HORVU6Hr1G050750.17 , HORVU6Hr1G050750.16 , HORVU6Hr1G050750.10 , HORVU6Hr1G050750.13 , HORVU6Hr1G050750.12 , HORVU6Hr1G050750.19 , HORVU6Hr1G050750.18 , HORVU1Hr1G026320.2 , HORVU1Hr1G026320.3 , HORVU1Hr1G026320.6 , HORVU1Hr1G026320.7 , HORVU1Hr1G026320.4 , HORVU1Hr1G026320.5 , HORVU0Hr1G038120.10 , HORVU0Hr1G038120.11
Wheat TraesCS2A02G102600 , TraesCS1B02G136200 , TraesCS1B02G136200 , TraesCS6B02G104600 , TraesCS1D02G117400 , TraesCS1D02G117400 , TraesCSU02G142500 , TraesCSU02G142500 , TraesCS6A02G077800 , TraesCS6A02G077800 , TraesCS1A02G116200 , TraesCS1A02G116200
Populus PNT56825 , PNT56824


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G257500 expressed protein -
2 Sobic.004G278900 regulatory protein, putative, expressed -
3 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
4 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
5 Sobic.001G395200 cyclin-related protein, putative, expressed -
6 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
7 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
8 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
9 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
10 Sobic.005G013300 vacuolar-sorting receptor precursor, putative, expressed -
11 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
12 Sobic.002G123600 expressed protein -
13 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
14 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
15 Sobic.009G069200 glycine-rich protein, putative, expressed -
16 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
17 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
18 Sobic.008G045800 PHD-finger family protein, expressed -
19 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
20 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G049600 Sobic003G049600 Sobic009G257500 Sobic009G257500 Sobic003G049600--Sobic009G257500 Sobic004G278900 Sobic004G278900 Sobic003G049600--Sobic004G278900 Sobic009G254000 Sobic009G254000 Sobic003G049600--Sobic009G254000 Sobic003G298900 Sobic003G298900 Sobic003G049600--Sobic003G298900 Sobic001G395200 Sobic001G395200 Sobic003G049600--Sobic001G395200 Sobic009G032200 Sobic009G032200 Sobic003G049600--Sobic009G032200 Sobic002G335500 Sobic002G335500 Sobic003G049600--Sobic002G335500 Sobic007G125700 Sobic007G125700 Sobic003G049600--Sobic007G125700 Sobic002G006100 Sobic002G006100 Sobic003G049600--Sobic002G006100 Sobic006G126600 Sobic006G126600 Sobic009G257500--Sobic006G126600 Sobic009G257500--Sobic009G032200 Sobic008G045800 Sobic008G045800 Sobic009G257500--Sobic008G045800 Sobic003G415100 Sobic003G415100 Sobic009G257500--Sobic003G415100 Sobic008G056200 Sobic008G056200 Sobic009G257500--Sobic008G056200 Sobic010G189100 Sobic010G189100 Sobic009G257500--Sobic010G189100 Sobic010G236200 Sobic010G236200 Sobic009G257500--Sobic010G236200 Sobic008G156200 Sobic008G156200 Sobic009G257500--Sobic008G156200 Sobic010G262900 Sobic010G262900 Sobic009G257500--Sobic010G262900 Sobic003G183466 Sobic003G183466 Sobic004G278900--Sobic003G183466 Sobic010G143600 Sobic010G143600 Sobic004G278900--Sobic010G143600 Sobic010G235700 Sobic010G235700 Sobic004G278900--Sobic010G235700 Sobic003G397100 Sobic003G397100 Sobic004G278900--Sobic003G397100 Sobic003G299500 Sobic003G299500 Sobic004G278900--Sobic003G299500 Sobic001G123600 Sobic001G123600 Sobic004G278900--Sobic001G123600 Sobic006G184200 Sobic006G184200 Sobic004G278900--Sobic006G184200 Sobic006G191200 Sobic006G191200 Sobic004G278900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic004G278900--Sobic007G034200 Sobic006G140300 Sobic006G140300 Sobic009G254000--Sobic006G140300 Sobic007G197100 Sobic007G197100 Sobic009G254000--Sobic007G197100 Sobic009G254000--Sobic003G298900 Sobic002G366000 Sobic002G366000 Sobic009G254000--Sobic002G366000 Sobic001G540700 Sobic001G540700 Sobic009G254000--Sobic001G540700 Sobic003G224700 Sobic003G224700 Sobic009G254000--Sobic003G224700 Sobic009G254000--Sobic002G006100 Sobic004G250600 Sobic004G250600 Sobic009G254000--Sobic004G250600 Sobic005G013300 Sobic005G013300 Sobic009G254000--Sobic005G013300 Sobic003G298900--Sobic002G006100 Sobic003G298900--Sobic001G540700 Sobic001G123100 Sobic001G123100 Sobic003G298900--Sobic001G123100 Sobic003G298900--Sobic009G254000 Sobic009G005700 Sobic009G005700 Sobic003G298900--Sobic009G005700 Sobic005G064100 Sobic005G064100 Sobic003G298900--Sobic005G064100 Sobic002G253900 Sobic002G253900 Sobic003G298900--Sobic002G253900 Sobic003G411700 Sobic003G411700 Sobic003G298900--Sobic003G411700 Sobic003G298900--Sobic007G197100 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic009G002200 Sobic009G002200 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic002G430900 Sobic002G430900 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic002G027600 Sobic002G027600 Sobic002G006100--Sobic002G027600 Sobic002G006100--Sobic003G259300 Sobic006G272800 Sobic006G272800 Sobic002G006100--Sobic006G272800 Sobic002G006100--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic002G006100--Sobic001G425700 Sobic002G006100--Sobic003G298900 Sobic002G284100 Sobic002G284100 Sobic002G006100--Sobic002G284100 Sobic002G006100--Sobic004G078500 Sobic009G225500 Sobic009G225500 Sobic002G006100--Sobic009G225500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.