Gene annotation
Transcriptome id Sobic.007G125700.1
Synonym Sb07g020240
Functional annotation NHL repeat-containing protein, putative, expressed
UniProt C5YKV5
Pfam -
Panther DB PTHR13833 PTHR13833:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23890 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os08g31970.1 : NHL repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006085
Brachypodium -
Barley HORVU2Hr1G023070.1
Wheat TraesCS2A02G131500 , TraesCS2A02G131500 , TraesCS2B02G153900 , TraesCS2D02G133600 , TraesCS2D02G133600
Populus -


JBrowse

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cDNA sequences
Sobic.007G125700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G430900 PWWP domain containing protein, expressed -
2 Sobic.004G207000 fasciated ear2, putative, expressed -
3 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
4 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
5 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
6 Sobic.003G077500 expressed protein -
7 Sobic.001G395200 cyclin-related protein, putative, expressed -
8 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
9 Sobic.006G280100 SET domain containing protein, expressed -
10 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
11 Sobic.010G103500 ATMAP70 protein, putative, expressed -
12 Sobic.009G031500 agenet domain containing protein, putative, expressed -
13 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
14 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
15 Sobic.001G540700 expressed protein -
16 Sobic.004G111000 bromodomain containing protein, expressed -
17 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
18 Sobic.002G231300 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
20 Sobic.003G360300 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G125700 Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic002G219900 Sobic002G219900 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic001G395200 Sobic001G395200 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic002G430900--Sobic010G269300 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G017900 Sobic002G017900 Sobic002G430900--Sobic002G017900 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700 Sobic006G022400 Sobic006G022400 Sobic004G207000--Sobic006G022400 Sobic001G540700 Sobic001G540700 Sobic004G207000--Sobic001G540700 Sobic004G207000--Sobic007G125700 Sobic004G207000--Sobic009G006900 Sobic002G302600 Sobic002G302600 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic005G032600 Sobic005G032600 Sobic004G207000--Sobic005G032600 Sobic004G207000--Sobic010G149600 Sobic009G031500 Sobic009G031500 Sobic004G207000--Sobic009G031500 Sobic010G149600--Sobic002G219900 Sobic010G149600--Sobic007G125700 Sobic010G149600--Sobic002G430900 Sobic010G149600--Sobic001G395200 Sobic010G149600--Sobic009G006900 Sobic010G236200 Sobic010G236200 Sobic010G149600--Sobic010G236200 Sobic010G149600--Sobic005G032600 Sobic010G149600--Sobic004G207000 Sobic010G149600--Sobic004G043750 Sobic010G269300--Sobic007G125700 Sobic010G269300--Sobic002G430900 Sobic002G263700 Sobic002G263700 Sobic010G269300--Sobic002G263700 Sobic001G123600 Sobic001G123600 Sobic010G269300--Sobic001G123600 Sobic003G360300 Sobic003G360300 Sobic010G269300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic010G269300--Sobic008G080500 Sobic010G269300--Sobic010G236200 Sobic010G279900 Sobic010G279900 Sobic010G269300--Sobic010G279900 Sobic009G032200 Sobic009G032200 Sobic010G269300--Sobic009G032200 Sobic002G219900--Sobic002G430900 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic003G077500--Sobic009G031500 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic001G395200--Sobic002G219900 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic006G280100--Sobic009G190200 Sobic006G280100--Sobic002G219900 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic006G280100--Sobic008G080500
Octagon: transcription factors


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