Gene annotation
Transcriptome id Sobic.008G029300.1,Sobic.008G029300.2
Synonym Sb08g002580
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
CBS domain containing membrane protein, putative, expressed
UniProt A0A1B6PB56 , A0A1B6PB20
Pfam PF00571
Panther DB PTHR11911 PTHR11911:SF106
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g05010.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a012279
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G029300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G075800 Up-reguralion under drought(PubMedID : 24916767)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
2 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.009G161800 protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
4 Sobic.004G170032 - -
5 Sobic.003G198150 - -
6 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
7 Sobic.002G148700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heavy metal transport/detoxification protein, putative, expressed -
8 Sobic.002G193600 endoglucanase, putative, expressed -
9 Sobic.002G173800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
10 Sobic.009G136700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
11 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
12 Sobic.001G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
13 Sobic.003G064300 - -
14 Sobic.003G356000 "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@The γ- glutamyl kinase activity of P5CS represents the rate-limiting step in this pathway and also features feedback inhibition by proline(PubMedID : 21958707)@amino acid kinase, putative, expressed K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase
15 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
16 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
17 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.001G510400 cytochrome P450 86A1, putative, expressed -
19 Sobic.002G110100 cytochrome P450 71E1, putative, expressed -
20 Sobic.004G296200 inactive receptor kinase At2g26730 precursor, putative, expressed -


Gene co-expression network
sample Sobic008G029300 Sobic008G029300 Sobic002G075800 Sobic002G075800 Sobic008G029300--Sobic002G075800 Sobic003G198200 Sobic003G198200 Sobic008G029300--Sobic003G198200 Sobic009G161800 Sobic009G161800 Sobic008G029300--Sobic009G161800 Sobic004G170032 Sobic004G170032 Sobic008G029300--Sobic004G170032 Sobic003G198150 Sobic003G198150 Sobic008G029300--Sobic003G198150 Sobic003G378000 Sobic003G378000 Sobic008G029300--Sobic003G378000 Sobic002G148700 Sobic002G148700 Sobic008G029300--Sobic002G148700 Sobic002G193600 Sobic002G193600 Sobic008G029300--Sobic002G193600 Sobic002G173800 Sobic002G173800 Sobic008G029300--Sobic002G173800 Sobic009G136700 Sobic009G136700 Sobic002G075800--Sobic009G136700 Sobic002G075800--Sobic008G029300 Sobic002G075800--Sobic002G173800 Sobic003G356000 Sobic003G356000 Sobic002G075800--Sobic003G356000 Sobic002G075800--Sobic009G161800 Sobic003G131800 Sobic003G131800 Sobic002G075800--Sobic003G131800 Sobic002G164960 Sobic002G164960 Sobic002G075800--Sobic002G164960 Sobic008G087500 Sobic008G087500 Sobic002G075800--Sobic008G087500 Sobic006G183200 Sobic006G183200 Sobic002G075800--Sobic006G183200 Sobic003G198200--Sobic003G198150 Sobic003G198200--Sobic004G170032 Sobic001G450800 Sobic001G450800 Sobic003G198200--Sobic001G450800 Sobic003G198200--Sobic002G148700 Sobic003G227600 Sobic003G227600 Sobic003G198200--Sobic003G227600 Sobic004G337900 Sobic004G337900 Sobic003G198200--Sobic004G337900 Sobic003G198200--Sobic008G029300 Sobic004G353600 Sobic004G353600 Sobic003G198200--Sobic004G353600 Sobic002G387200 Sobic002G387200 Sobic003G198200--Sobic002G387200 Sobic009G161800--Sobic008G029300 Sobic010G231900 Sobic010G231900 Sobic009G161800--Sobic010G231900 Sobic009G161800--Sobic002G075800 Sobic009G161800--Sobic004G170032 Sobic009G182400 Sobic009G182400 Sobic009G161800--Sobic009G182400 Sobic003G064300 Sobic003G064300 Sobic009G161800--Sobic003G064300 Sobic002G207100 Sobic002G207100 Sobic009G161800--Sobic002G207100 Sobic007G143200 Sobic007G143200 Sobic009G161800--Sobic007G143200 Sobic004G309600 Sobic004G309600 Sobic009G161800--Sobic004G309600 Sobic002G110200 Sobic002G110200 Sobic004G170032--Sobic002G110200 Sobic002G182800 Sobic002G182800 Sobic004G170032--Sobic002G182800 Sobic009G128300 Sobic009G128300 Sobic004G170032--Sobic009G128300 Sobic002G331450 Sobic002G331450 Sobic004G170032--Sobic002G331450 Sobic001G075101 Sobic001G075101 Sobic004G170032--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic004G170032--Sobic007G169600 Sobic004G170032--Sobic003G198150 Sobic001G509400 Sobic001G509400 Sobic004G170032--Sobic001G509400 Sobic004G170032--Sobic003G227600 Sobic008G044750 Sobic008G044750 Sobic003G198150--Sobic008G044750 Sobic003G198150--Sobic003G198200 Sobic003G198150--Sobic009G128300 Sobic003G198150--Sobic001G509400 Sobic003G079800 Sobic003G079800 Sobic003G198150--Sobic003G079800 Sobic003G198150--Sobic003G227600 Sobic003G198150--Sobic004G170032 Sobic003G233900 Sobic003G233900 Sobic003G198150--Sobic003G233900 Sobic003G198150--Sobic001G450800 Sobic001G155300 Sobic001G155300 Sobic003G378000--Sobic001G155300 Sobic003G378000--Sobic004G170032 Sobic003G378000--Sobic002G110200 Sobic003G378000--Sobic004G353600 Sobic006G078350 Sobic006G078350 Sobic003G378000--Sobic006G078350 Sobic003G378000--Sobic007G143200 Sobic002G023900 Sobic002G023900 Sobic003G378000--Sobic002G023900 Sobic007G143100 Sobic007G143100 Sobic003G378000--Sobic007G143100 Sobic003G378000--Sobic007G169600 Sobic002G148700--Sobic004G170032 Sobic003G036600 Sobic003G036600 Sobic002G148700--Sobic003G036600 Sobic002G148700--Sobic003G198150 Sobic010G260300 Sobic010G260300 Sobic002G148700--Sobic010G260300 Sobic002G148700--Sobic003G198200 Sobic002G148700--Sobic002G110200 Sobic002G148700--Sobic003G233900 Sobic002G189000 Sobic002G189000 Sobic002G148700--Sobic002G189000 Sobic002G013900 Sobic002G013900 Sobic002G148700--Sobic002G013900 Sobic001G168500 Sobic001G168500 Sobic002G193600--Sobic001G168500 Sobic005G121200 Sobic005G121200 Sobic002G193600--Sobic005G121200 Sobic002G193600--Sobic008G029300 Sobic003G226300 Sobic003G226300 Sobic002G193600--Sobic003G226300 Sobic002G193600--Sobic002G173800 Sobic002G193600--Sobic002G075800 Sobic004G203500 Sobic004G203500 Sobic002G193600--Sobic004G203500 Sobic005G061033 Sobic005G061033 Sobic002G193600--Sobic005G061033 Sobic001G294600 Sobic001G294600 Sobic002G193600--Sobic001G294600 Sobic002G173800--Sobic002G075800 Sobic002G110100 Sobic002G110100 Sobic002G173800--Sobic002G110100 Sobic002G173800--Sobic008G029300 Sobic001G460300 Sobic001G460300 Sobic002G173800--Sobic001G460300 Sobic007G180900 Sobic007G180900 Sobic002G173800--Sobic007G180900 Sobic002G173800--Sobic005G121200 Sobic002G173800--Sobic002G193600 Sobic002G118700 Sobic002G118700 Sobic002G173800--Sobic002G118700 Sobic009G072200 Sobic009G072200 Sobic002G173800--Sobic009G072200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.