Gene annotation
| Transcriptome id | Sobic.003G356000.1,Sobic.003G356000.2 |
|---|---|
| Synonym | P5CS2, P5CS2;P5CS2;Delta1-pyrroline-5-carboxylase-synthestase, P5CS2;P5CS2;P5CS2;Delta1-pyrroline-5-carboxylase-synthestase 2, Sb03g039820,Delta1-pyrroline-5-carboxylase-synthestase 2, SbP5CS1 |
| Functional annotation | "Expressed in drought, salt and oxidative stress" (PubMedID : 29862293) Up-reguralion under drought (PubMedID : 24916767) "an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35" (PubMedID : 26320239) Delta 1-pyrroline-5-carboxylate synthase 2 (PubMedID : 26320239) Up-reguralion under drought (PubMedID : 24916767) "an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35" (PubMedID : 26320239) Delta 1-pyrroline-5-carboxylate synthase 2 (PubMedID : 26320239) The γ- glutamyl kinase activity of P5CS represents the rate-limiting step in this pathway and also features feedback inhibition by proline (PubMedID : 21958707) amino acid kinase, putative, expressed |
| UniProt | A0A1B6Q707 , A0A1B6Q701 , C8CB71 |
| Pfam | PF00171 PF00696 PF00696 |
| Panther DB | PTHR11063 PTHR11063:SF13 |
| NCBI CDD | KOG1154; Gamma-glutamyl kinase |
| KEGG Orthology | K12657; ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | AT3G55610 : delta 1-pyrroline-5-carboxylate synthase 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g62900.1 : amino acid kinase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043884 , Zm00025a039652 |
| Brachypodium | KQK10568 |
| Barley | HORVU3Hr1G085760.16 , HORVU3Hr1G085760.9 , HORVU3Hr1G085760.8 , HORVU3Hr1G085760.3 , HORVU3Hr1G085760.2 , HORVU3Hr1G085760.7 , HORVU3Hr1G085760.6 , HORVU3Hr1G085760.5 , HORVU3Hr1G085760.4 , HORVU3Hr1G085760.13 , HORVU3Hr1G085760.12 , HORVU3Hr1G085760.11 , HORVU3Hr1G085760.10 , HORVU3Hr1G085760.1 , HORVU3Hr1G085760.15 , HORVU3Hr1G085760.14 |
| Wheat | TraesCS3A02G363700 , TraesCS3A02G363700 , TraesCS3A02G363700 , TraesCS3B02G395900 , TraesCS3D02G357200 , TraesCS3D02G357200 |
| Populus | - |
JBrowse
| Sobic.003G356000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G075800 | Up-reguralion under drought(PubMedID : 24916767)@uncharacterized glycosyltransferase, putative, expressed | K06617: raffinose synthase |
| 2 | Sobic.003G198200 | "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 3 | Sobic.002G148700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heavy metal transport/detoxification protein, putative, expressed | - |
| 4 | Sobic.008G087500 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 5 | Sobic.006G183200 | homeobox and START domains containing protein, putative, expressed | K09338: homeobox-leucine zipper protein |
| 6 | Sobic.008G029300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 7 | Sobic.004G116300 | expressed protein | - |
| 8 | Sobic.009G136700 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 9 | Sobic.004G124500 | transporter family protein, putative, expressed | - |
| 10 | Sobic.006G000300 | - | - |
| 11 | Sobic.001G424400 | similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 12 | Sobic.009G161800 | protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 13 | Sobic.004G219900 | -(PubMedID : 26976818)@phosphorylation of leaf PEPC during C4 photosynthesis.(PubMedID : 16925599)@CAMK_CAMK_like.14 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 14 | Sobic.009G072200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed | - |
| 15 | Sobic.005G172900 | UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | K08237: hydroquinone glucosyltransferase |
| 16 | Sobic.006G148700 | kinase, pfkB family, putative, expressed | K00856: E2.7.1.20, adenosine kinase |
| 17 | Sobic.004G057900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 18 | Sobic.006G235800 | expressed protein | - |
| 19 | Sobic.010G169300 | T-complex protein, putative, expressed | K09497: T-complex protein 1 subunit epsilon |
| 20 | Sobic.003G336100 | auxin efflux carrier component, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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