Gene annotation
| Transcriptome id | Sobic.008G087500.1 |
|---|---|
| Synonym | Sb08g009120 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) expressed protein |
| UniProt | C5YU44 |
| Pfam | - |
| Panther DB | PTHR33595 PTHR33595:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G50360 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os12g13910.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a054292 |
| Brachypodium | KQJ91745 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G087500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G146500 | RGH1A, putative, expressed | - |
| 2 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 3 | Sobic.002G164960 | - | - |
| 4 | Sobic.006G116801 | - | - |
| 5 | Sobic.001G424000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed | - |
| 6 | Sobic.001G409400 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed | - |
| 7 | Sobic.002G075800 | Up-reguralion under drought(PubMedID : 24916767)@uncharacterized glycosyltransferase, putative, expressed | K06617: raffinose synthase |
| 8 | Sobic.004G101400 | Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 9 | Sobic.008G087800 | expressed protein | - |
| 10 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 11 | Sobic.010G231900 | early nodulin 20 precursor, putative, expressed | - |
| 12 | Sobic.002G141800 | expressed protein | - |
| 13 | Sobic.003G356000 | "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@The γ- glutamyl kinase activity of P5CS represents the rate-limiting step in this pathway and also features feedback inhibition by proline(PubMedID : 21958707)@amino acid kinase, putative, expressed | K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase |
| 14 | Sobic.002G172000 | similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 15 | Sobic.007G152800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Glutamate decarboxylase("PubMedID : 26759170,PubMedID : 24597475")@decarboxylase, putative, expressed | K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase |
| 16 | Sobic.005G062500 | - | - |
| 17 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 18 | Sobic.005G121200 | "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 19 | Sobic.001G070401 | - | - |
| 20 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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