Gene annotation
| Transcriptome id | Sobic.002G075800.1 |
|---|---|
| Synonym | AtSIP2, SIP2, Sb02g006320 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) uncharacterized glycosyltransferase, putative, expressed |
| UniProt | C5XDA7 |
| Pfam | PF05691 |
| Panther DB | PTHR31268 PTHR31268:SF9 |
| NCBI CDD | - |
| KEGG Orthology | K06617; raffinose synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G57520 : seed imbibition 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g10840.1 : uncharacterized glycosyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045384 , Zm00025a004984 , Zm00025a004986 , Zm00025a008682 |
| Brachypodium | KQK20388 , KQK20387 , KQK02890 |
| Barley | HORVU3Hr1G020780.10 , HORVU3Hr1G020780.8 , HORVU3Hr1G020780.9 , HORVU3Hr1G020780.1 , HORVU3Hr1G020780.2 , HORVU3Hr1G020780.3 , HORVU3Hr1G020780.4 , HORVU3Hr1G020780.5 , HORVU3Hr1G020780.6 , HORVU3Hr1G020780.7 |
| Wheat | TraesCS3A02G113900 , TraesCS3A02G113900 , TraesCS3B02G133400 , TraesCS3D02G116400 , TraesCS3D02G116400 |
| Populus | - |
JBrowse
| Sobic.002G075800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G136700 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 2 | Sobic.008G029300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 3 | Sobic.002G173800 | hydroxyproline-rich glycoprotein family protein, putative, expressed | - |
| 4 | Sobic.003G356000 | "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@The γ- glutamyl kinase activity of P5CS represents the rate-limiting step in this pathway and also features feedback inhibition by proline(PubMedID : 21958707)@amino acid kinase, putative, expressed | K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase |
| 5 | Sobic.009G161800 | protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 6 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 7 | Sobic.002G164960 | - | - |
| 8 | Sobic.008G087500 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 9 | Sobic.006G183200 | homeobox and START domains containing protein, putative, expressed | K09338: homeobox-leucine zipper protein |
| 10 | Sobic.007G195300 | thioesterase family protein, putative, expressed | K17362: acyl-coenzyme A thioesterase 13 |
| 11 | Sobic.004G170032 | - | - |
| 12 | Sobic.009G072200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed | - |
| 13 | Sobic.003G198200 | "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 14 | Sobic.002G148700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heavy metal transport/detoxification protein, putative, expressed | - |
| 15 | Sobic.002G193600 | endoglucanase, putative, expressed | - |
| 16 | Sobic.003G006866 | - | - |
| 17 | Sobic.002G110100 | cytochrome P450 71E1, putative, expressed | - |
| 18 | Sobic.004G116300 | expressed protein | - |
| 19 | Sobic.003G064300 | - | - |
| 20 | Sobic.009G222000 | LTPL153 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
