Gene annotation
Transcriptome id Sobic.003G131800.1,Sobic.003G131800.5,Sobic.003G131800.2,Sobic.003G131800.4,Sobic.003G131800.3
Synonym ZIFL2, Sb03g011240
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
major facilitator superfamily antiporter, putative, expressed
UniProt A0A1W0VX83 , A0A1B6Q2W3 , A0A1W0VX65 , A0A1W0VX58 , Q84YG1 , C5XHA6 , Q84YF8
Pfam PF07690
Panther DB PTHR23504 PTHR23504:SF21
NCBI CDD KOG2615; Permease of the major facilitator superfamily
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G13750 : zinc induced facilitator-like 2,zinc induced facilitator-like 1
RAP-DB (Rice) LOC_Os01g17214.1 : major facilitator superfamily antiporter, putative, expressed
MaizeGDB (Corn) Zm00025a024156 , Zm00025a024722 , Zm00025a035195 , Zm00025a005418
Brachypodium KQK03949 , KQK03948
Barley HORVU3Hr1G043300.22 , HORVU3Hr1G043300.21 , HORVU3Hr1G043300.20 , HORVU3Hr1G043300.15 , HORVU3Hr1G043300.14 , HORVU3Hr1G043300.13 , HORVU3Hr1G043300.12 , HORVU3Hr1G043300.11 , HORVU3Hr1G043300.10 , HORVU3Hr1G043300.19 , HORVU3Hr1G043300.18 , HORVU3Hr1G043300.9 , HORVU3Hr1G043300.8 , HORVU3Hr1G043300.7 , HORVU3Hr1G043300.6 , HORVU3Hr1G043300.5 , HORVU3Hr1G043300.4 , HORVU3Hr1G043300.3 , HORVU3Hr1G043300.1 , HORVU3Hr1G043300.16
Wheat TraesCS5B02G542800 , TraesCS5B02G542800 , TraesCS5D02G545000 , TraesCS5D02G545000 , TraesCS5D02G544200 , TraesCS4A02G329200 , TraesCS5B02G542900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G131800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
2 Sobic.002G278800 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
3 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
5 Sobic.007G195300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
6 Sobic.010G012400 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
7 Sobic.003G173700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
8 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.009G136500 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.001G332966 - -
11 Sobic.001G338000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
12 Sobic.003G006866 - -
13 Sobic.009G136700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
15 Sobic.009G206300 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
16 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
17 Sobic.004G157550 - -
18 Sobic.004G157550 - -
19 Sobic.004G157550 - -
20 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase


Gene co-expression network
sample Sobic003G131800 Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic003G131800--Sobic002G278700 Sobic002G278800 Sobic002G278800 Sobic003G131800--Sobic002G278800 Sobic008G030700 Sobic008G030700 Sobic003G131800--Sobic008G030700 Sobic006G175700 Sobic006G175700 Sobic003G131800--Sobic006G175700 Sobic007G195300 Sobic007G195300 Sobic003G131800--Sobic007G195300 Sobic010G012400 Sobic010G012400 Sobic003G131800--Sobic010G012400 Sobic003G173700 Sobic003G173700 Sobic003G131800--Sobic003G173700 Sobic001G249500 Sobic001G249500 Sobic003G131800--Sobic001G249500 Sobic009G136500 Sobic009G136500 Sobic003G131800--Sobic009G136500 Sobic002G278700--Sobic002G278800 Sobic002G278700--Sobic010G012400 Sobic002G278700--Sobic003G131800 Sobic002G278700--Sobic008G030700 Sobic002G278700--Sobic003G173700 Sobic001G332966 Sobic001G332966 Sobic002G278700--Sobic001G332966 Sobic002G278700--Sobic006G175700 Sobic002G278700--Sobic009G136500 Sobic001G338000 Sobic001G338000 Sobic002G278700--Sobic001G338000 Sobic002G278800--Sobic002G278700 Sobic002G278800--Sobic003G173700 Sobic002G278800--Sobic001G332966 Sobic002G278800--Sobic003G131800 Sobic002G278800--Sobic008G030700 Sobic002G278800--Sobic006G175700 Sobic002G278800--Sobic010G012400 Sobic002G278800--Sobic001G338000 Sobic002G278800--Sobic009G136500 Sobic008G030700--Sobic006G175700 Sobic008G030700--Sobic002G278800 Sobic008G030700--Sobic002G278700 Sobic008G030700--Sobic001G249500 Sobic008G030700--Sobic003G131800 Sobic008G030700--Sobic010G012400 Sobic005G190800 Sobic005G190800 Sobic008G030700--Sobic005G190800 Sobic001G535600 Sobic001G535600 Sobic008G030700--Sobic001G535600 Sobic008G030700--Sobic003G173700 Sobic006G175700--Sobic005G190800 Sobic006G175700--Sobic008G030700 Sobic006G175700--Sobic002G278800 Sobic003G007800 Sobic003G007800 Sobic006G175700--Sobic003G007800 Sobic006G175700--Sobic001G249500 Sobic006G175700--Sobic001G338000 Sobic002G128600 Sobic002G128600 Sobic006G175700--Sobic002G128600 Sobic006G175700--Sobic003G131800 Sobic006G175700--Sobic002G278700 Sobic007G195300--Sobic003G131800 Sobic007G195300--Sobic008G030700 Sobic007G195300--Sobic002G278700 Sobic007G195300--Sobic002G278800 Sobic007G195300--Sobic010G012400 Sobic007G195300--Sobic001G249500 Sobic007G195300--Sobic006G175700 Sobic007G195300--Sobic005G190800 Sobic004G157550 Sobic004G157550 Sobic007G195300--Sobic004G157550 Sobic010G012400--Sobic002G278700 Sobic010G012400--Sobic002G278800 Sobic010G012400--Sobic008G030700 Sobic010G012400--Sobic003G131800 Sobic010G012400--Sobic004G157550 Sobic009G206300 Sobic009G206300 Sobic010G012400--Sobic009G206300 Sobic010G012400--Sobic007G195300 Sobic003G173700--Sobic009G136500 Sobic003G173700--Sobic002G278800 Sobic003G173700--Sobic002G278700 Sobic003G173700--Sobic001G332966 Sobic003G173700--Sobic006G175700 Sobic003G173700--Sobic001G338000 Sobic003G173700--Sobic008G030700 Sobic003G173700--Sobic003G131800 Sobic003G173700--Sobic010G012400 Sobic006G227000 Sobic006G227000 Sobic001G249500--Sobic006G227000 Sobic001G249500--Sobic002G128600 Sobic001G249500--Sobic006G175700 Sobic001G249500--Sobic008G030700 Sobic001G249500--Sobic005G190800 Sobic001G249600 Sobic001G249600 Sobic001G249500--Sobic001G249600 Sobic007G069500 Sobic007G069500 Sobic001G249500--Sobic007G069500 Sobic001G249500--Sobic003G007800 Sobic001G249500--Sobic007G195300 Sobic009G136500--Sobic003G173700 Sobic009G136500--Sobic002G278800 Sobic009G136500--Sobic002G278700 Sobic009G136500--Sobic003G131800 Sobic009G136500--Sobic008G030700 Sobic009G136500--Sobic006G175700 Sobic009G136500--Sobic010G012400 Sobic009G136500--Sobic001G332966 Sobic009G136500--Sobic007G195300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.