Gene annotation
| Transcriptome id | Sobic.002G278700.1 |
|---|---|
| Synonym | Sb02g031160 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) ribonuclease T2 family domain containing protein, expressed |
| UniProt | C5X6U9 |
| Pfam | PF00445 |
| Panther DB | PTHR11240 PTHR11240:SF24 |
| NCBI CDD | KOG1642; Ribonuclease, T2 family |
| KEGG Orthology | K01166; ribonuclease T2 |
| Gene Ontology | GO:0003723; RNA binding |
Orthologs (automatic annotation)
| TAIR | AT1G14220 : Ribonuclease T2 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g36680.1 : ribonuclease T2 family domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | HORVU1Hr1G093660.9 , HORVU1Hr1G093660.8 , HORVU1Hr1G093660.2 , HORVU1Hr1G093660.7 , HORVU1Hr1G093660.6 , HORVU1Hr1G093660.5 , HORVU1Hr1G093660.13 , HORVU1Hr1G093660.12 , HORVU1Hr1G093660.11 , HORVU1Hr1G093660.10 , HORVU1Hr1G093660.15 , HORVU1Hr1G093660.14 , HORVU1Hr1G093670.1 , HORVU1Hr1G093660.3 , HORVU1Hr1G093660.4 , HORVU1Hr1G093780.1 , HORVU1Hr1G093780.2 , HORVU1Hr1G093560.1 |
| Wheat | TraesCS1B02G170200 |
| Populus | - |
JBrowse
| Sobic.002G278700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G278800 | ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 2 | Sobic.010G012400 | anthocyanidin 3-O-glucosyltransferase, putative, expressed | - |
| 3 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 4 | Sobic.008G030700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 5 | Sobic.003G173700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed | K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| 6 | Sobic.001G332966 | - | - |
| 7 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 8 | Sobic.009G136500 | Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 9 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 10 | Sobic.007G195300 | thioesterase family protein, putative, expressed | K17362: acyl-coenzyme A thioesterase 13 |
| 11 | Sobic.004G157550 | - | - |
| 12 | Sobic.004G157550 | - | - |
| 13 | Sobic.004G157550 | - | - |
| 14 | Sobic.009G206300 | anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 15 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 16 | Sobic.003G006866 | - | - |
| 17 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 18 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 19 | Sobic.006G227000 | leucoanthocyanidin reductase, putative, expressed | K08695: anthocyanidin reductase |
| 20 | Sobic.005G222400 | enoyl-CoA hydratase/isomerase family protein, putative, expressed | K05605: 3-hydroxyisobutyryl-CoA hydrolase |
Gene co-expression network
Octagon: transcription factors
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