Gene annotation
| Transcriptome id | Sobic.005G190800.2 |
|---|---|
| Synonym | G-TMT, VTE4, Sb05g024740, TMT1 |
| Functional annotation | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| UniProt | Q8LJW6 , A0A1Z5RJT9 |
| Pfam | PF08241 |
| Panther DB | PTHR10108 PTHR10108:SF708 |
| NCBI CDD | KOG1269; SAM-dependent methyltransferases |
| KEGG Orthology | K05928; tocopherol O-methyltransferase |
| Gene Ontology | GO:0008168; methyltransferase activity GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G64970 : gamma-tocopherol methyltransferase |
|---|---|
| RAP-DB (Rice) | LOC_Os02g47310.1 : Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a021689 |
| Brachypodium | KQK00902 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 2 | Sobic.002G128600 | lecithin:cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 3 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 4 | Sobic.006G227000 | leucoanthocyanidin reductase, putative, expressed | K08695: anthocyanidin reductase |
| 5 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 6 | Sobic.003G317800 | lysM domain containing protein, putative | - |
| 7 | Sobic.004G038300 | cycloartenol synthase, putative, expressed | - |
| 8 | Sobic.004G328900 | expressed protein | - |
| 9 | Sobic.007G069500 | expressed protein | - |
| 10 | Sobic.008G030700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 11 | Sobic.001G255300 | Protein tyrosine decarboxylase 4 (OS)(PubMedID : 27208977)@decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 12 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 13 | Sobic.008G189500 | similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 14 | Sobic.001G379300 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 15 | Sobic.001G249600 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 16 | Sobic.005G029400 | strictosidine synthase, putative, expressed | - |
| 17 | Sobic.009G070700 | Acid phosphatase class B family protein(PubMedID : 26320239)@HAD superfamily phosphatase, putative, expressed | - |
| 18 | Sobic.003G287000 | BURP domain containing protein, expressed | - |
| 19 | Sobic.006G238100 | LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 20 | Sobic.002G209800 | ZOS9-11 - C2H2 zinc finger protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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