Gene annotation
Transcriptome id Sobic.003G317800.1
Synonym Sb03g036500
Functional annotation lysM domain containing protein, putative
UniProt C5XLQ5
Pfam PF01476
Panther DB PTHR34997 PTHR34997:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g57400.1 : lysM domain containing protein, putative
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G328900 expressed protein -
2 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
3 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.001G255300 Protein tyrosine decarboxylase 4 (OS)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
5 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
6 Sobic.004G038300 cycloartenol synthase, putative, expressed -
7 Sobic.002G416950 - -
8 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
9 Sobic.007G069500 expressed protein -
10 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
12 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
13 Sobic.002G415300 - -
14 Sobic.003G068300 transferase family protein, putative, expressed -
15 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
16 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.007G009600 expressed protein -
18 Sobic.005G029400 strictosidine synthase, putative, expressed -
19 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
20 Sobic.001G541300 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic003G317800 Sobic003G317800 Sobic004G328900 Sobic004G328900 Sobic003G317800--Sobic004G328900 Sobic002G128600 Sobic002G128600 Sobic003G317800--Sobic002G128600 Sobic001G379300 Sobic001G379300 Sobic003G317800--Sobic001G379300 Sobic001G255300 Sobic001G255300 Sobic003G317800--Sobic001G255300 Sobic008G163200 Sobic008G163200 Sobic003G317800--Sobic008G163200 Sobic004G038300 Sobic004G038300 Sobic003G317800--Sobic004G038300 Sobic002G416950 Sobic002G416950 Sobic003G317800--Sobic002G416950 Sobic003G007800 Sobic003G007800 Sobic003G317800--Sobic003G007800 Sobic007G069500 Sobic007G069500 Sobic003G317800--Sobic007G069500 Sobic004G328900--Sobic003G317800 Sobic004G328900--Sobic001G255300 Sobic004G328900--Sobic001G379300 Sobic004G328900--Sobic008G163200 Sobic004G328900--Sobic002G416950 Sobic004G328900--Sobic002G128600 Sobic006G238100 Sobic006G238100 Sobic004G328900--Sobic006G238100 Sobic004G328900--Sobic003G007800 Sobic003G068300 Sobic003G068300 Sobic004G328900--Sobic003G068300 Sobic006G227000 Sobic006G227000 Sobic002G128600--Sobic006G227000 Sobic002G128600--Sobic003G317800 Sobic002G128600--Sobic007G069500 Sobic005G190800 Sobic005G190800 Sobic002G128600--Sobic005G190800 Sobic001G249500 Sobic001G249500 Sobic002G128600--Sobic001G249500 Sobic002G128600--Sobic004G328900 Sobic002G128600--Sobic001G379300 Sobic002G128600--Sobic001G255300 Sobic002G128600--Sobic003G007800 Sobic001G379300--Sobic006G238100 Sobic001G379300--Sobic002G416950 Sobic001G379300--Sobic001G255300 Sobic001G379300--Sobic004G328900 Sobic001G379300--Sobic003G317800 Sobic004G060700 Sobic004G060700 Sobic001G379300--Sobic004G060700 Sobic007G009600 Sobic007G009600 Sobic001G379300--Sobic007G009600 Sobic001G379300--Sobic008G163200 Sobic001G379300--Sobic007G069500 Sobic001G255300--Sobic001G379300 Sobic001G255300--Sobic004G328900 Sobic001G255300--Sobic006G238100 Sobic001G255300--Sobic003G317800 Sobic001G255300--Sobic008G163200 Sobic001G255300--Sobic002G416950 Sobic001G255300--Sobic003G007800 Sobic008G189500 Sobic008G189500 Sobic001G255300--Sobic008G189500 Sobic001G255300--Sobic003G068300 Sobic002G415300 Sobic002G415300 Sobic008G163200--Sobic002G415300 Sobic008G163200--Sobic004G060700 Sobic002G415400 Sobic002G415400 Sobic008G163200--Sobic002G415400 Sobic008G163200--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic008G163200--Sobic007G170800 Sobic008G163200--Sobic003G068300 Sobic008G163200--Sobic001G379300 Sobic008G163200--Sobic001G255300 Sobic001G435600 Sobic001G435600 Sobic008G163200--Sobic001G435600 Sobic004G038300--Sobic003G317800 Sobic004G038300--Sobic001G255300 Sobic004G038300--Sobic004G328900 Sobic004G038300--Sobic002G128600 Sobic004G038300--Sobic001G379300 Sobic004G038300--Sobic005G190800 Sobic004G038300--Sobic006G238100 Sobic002G209800 Sobic002G209800 Sobic004G038300--Sobic002G209800 Sobic004G038300--Sobic003G007800 Sobic002G416950--Sobic004G060700 Sobic002G416950--Sobic001G379300 Sobic002G416950--Sobic002G415300 Sobic002G416950--Sobic006G238100 Sobic002G416950--Sobic007G009600 Sobic002G416950--Sobic001G435600 Sobic002G416950--Sobic008G163200 Sobic002G416950--Sobic007G170800 Sobic002G416950--Sobic002G415400 Sobic003G007800--Sobic008G189500 Sobic003G007800--Sobic001G255300 Sobic003G007800--Sobic005G190800 Sobic006G175700 Sobic006G175700 Sobic003G007800--Sobic006G175700 Sobic003G007800--Sobic004G328900 Sobic003G007800--Sobic003G317800 Sobic003G007800--Sobic002G128600 Sobic005G029400 Sobic005G029400 Sobic003G007800--Sobic005G029400 Sobic003G007800--Sobic004G038300 Sobic007G069500--Sobic002G128600 Sobic007G069500--Sobic001G379300 Sobic007G069500--Sobic006G227000 Sobic007G069500--Sobic003G317800 Sobic007G069500--Sobic001G255300 Sobic007G069500--Sobic005G029400 Sobic007G069500--Sobic006G238100 Sobic007G069500--Sobic004G328900 Sobic006G253900 Sobic006G253900 Sobic007G069500--Sobic006G253900
Octagon: transcription factors


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