Gene annotation
| Transcriptome id | Sobic.008G030700.1 |
|---|---|
| Synonym | Sb08g002670, LP1, LTP1, ATLTP1 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| UniProt | C5YRL0 |
| Pfam | PF00234 |
| Panther DB | PTHR33076 PTHR33076:SF7 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G38540 : lipid transfer protein 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g02369.1 : LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| MaizeGDB (Corn) | Zm00025a053814 , Zm00025a029018 |
| Brachypodium | KQJ92551 |
| Barley | HORVU5Hr1G046550.1 , HORVU3Hr1G009320.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G030700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 2 | Sobic.002G278800 | ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 3 | Sobic.002G278700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 4 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 5 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 6 | Sobic.010G012400 | anthocyanidin 3-O-glucosyltransferase, putative, expressed | - |
| 7 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 8 | Sobic.001G535600 | LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 9 | Sobic.003G173700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed | K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| 10 | Sobic.007G195300 | thioesterase family protein, putative, expressed | K17362: acyl-coenzyme A thioesterase 13 |
| 11 | Sobic.006G227000 | leucoanthocyanidin reductase, putative, expressed | K08695: anthocyanidin reductase |
| 12 | Sobic.003G287000 | BURP domain containing protein, expressed | - |
| 13 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 14 | Sobic.009G136500 | Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 15 | Sobic.002G128600 | lecithin:cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 16 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 17 | Sobic.001G249600 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 18 | Sobic.004G157550 | - | - |
| 19 | Sobic.004G157550 | - | - |
| 20 | Sobic.004G157550 | - | - |
Gene co-expression network
Octagon: transcription factors
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