Gene annotation
Transcriptome id Sobic.006G183200.1,Sobic.006G183200.2
Synonym Sb06g025750, HD-GL2-1, HDG1
Functional annotation homeobox and START domains containing protein, putative, expressed
UniProt A0A1Z5RFG4 , A0A1B6PMQ5
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF258
NCBI CDD -
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT3G61150 : homeodomain GLABROUS 1
RAP-DB (Rice) LOC_Os04g48070.2 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056774 , Zm00025a023723 , Zm00025a003493
Brachypodium PNT67971 , KQJ97974 , PNT71555 , KQJ84101 , KQJ84100 , KQK00690 , KQK00745 , KQJ96496
Barley HORVU2Hr1G095210.7 , HORVU2Hr1G095210.6 , HORVU2Hr1G095210.5 , HORVU2Hr1G095210.4 , HORVU2Hr1G095210.3 , HORVU2Hr1G095210.2 , HORVU2Hr1G095210.1 , HORVU2Hr1G095210.9 , HORVU2Hr1G095210.8 , HORVU1Hr1G050620.6 , HORVU1Hr1G050620.7 , HORVU1Hr1G050620.4 , HORVU1Hr1G050620.5 , HORVU1Hr1G050620.2 , HORVU1Hr1G050620.3 , HORVU1Hr1G050620.1 , HORVU1Hr1G050620.8 , HORVU1Hr1G050620.9 , HORVU1Hr1G050620.14 , HORVU1Hr1G050620.15 , HORVU1Hr1G050620.16 , HORVU1Hr1G050620.17 , HORVU1Hr1G050620.10 , HORVU1Hr1G050620.11 , HORVU1Hr1G050620.12 , HORVU1Hr1G050620.13 , HORVU2Hr1G095210.14 , HORVU2Hr1G095210.12 , HORVU2Hr1G095210.11 , HORVU2Hr1G095210.10 , HORVU1Hr1G050620.21 , HORVU1Hr1G050620.22 , HORVU1Hr1G050620.18
Wheat TraesCS7D02G168700 , TraesCS6D02G237000 , TraesCS6B02G269700 , TraesCS1D02G197300 , TraesCS6A02G255800 , TraesCS1B02G208400 , TraesCS1A02G193400 , TraesCS2A02G401200 , TraesCS2A02G401200 , TraesCS2A02G401200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
2 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
3 Sobic.009G136700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
5 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
6 Sobic.002G075800 Up-reguralion under drought(PubMedID : 24916767)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
7 Sobic.003G356000 "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@Up-reguralion under drought(PubMedID : 24916767)@"an enzyme responsible for the ratelimiting step in proline biosynthesis, expressed at higher levels in the stay-green line, B35"(PubMedID : 26320239)@Delta 1-pyrroline-5-carboxylate synthase 2(PubMedID : 26320239)@The γ- glutamyl kinase activity of P5CS represents the rate-limiting step in this pathway and also features feedback inhibition by proline(PubMedID : 21958707)@amino acid kinase, putative, expressed K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase
8 Sobic.004G295500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.003G131800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -
10 Sobic.003G094600 glycosyltransferase protein, putative, expressed -
11 Sobic.008G029300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
12 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
13 Sobic.001G460000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
14 Sobic.003G230900 function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
15 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.007G195300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
17 Sobic.009G136500 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.001G249600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G173700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
20 Sobic.001G374900 RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic006G183200 Sobic006G183200 Sobic010G054000 Sobic010G054000 Sobic006G183200--Sobic010G054000 Sobic004G203500 Sobic004G203500 Sobic006G183200--Sobic004G203500 Sobic009G136700 Sobic009G136700 Sobic006G183200--Sobic009G136700 Sobic007G130800 Sobic007G130800 Sobic006G183200--Sobic007G130800 Sobic002G388600 Sobic002G388600 Sobic006G183200--Sobic002G388600 Sobic002G075800 Sobic002G075800 Sobic006G183200--Sobic002G075800 Sobic003G356000 Sobic003G356000 Sobic006G183200--Sobic003G356000 Sobic004G295500 Sobic004G295500 Sobic006G183200--Sobic004G295500 Sobic003G131800 Sobic003G131800 Sobic006G183200--Sobic003G131800 Sobic010G054000--Sobic006G183200 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic010G054000--Sobic002G388600 Sobic007G203000 Sobic007G203000 Sobic010G054000--Sobic007G203000 Sobic010G054000--Sobic004G295500 Sobic002G225000 Sobic002G225000 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G059200 Sobic010G059200 Sobic010G054000--Sobic010G059200 Sobic004G203500--Sobic004G295500 Sobic004G203500--Sobic010G054000 Sobic004G203500--Sobic007G203000 Sobic004G203500--Sobic006G183200 Sobic003G205300 Sobic003G205300 Sobic004G203500--Sobic003G205300 Sobic004G203500--Sobic002G388600 Sobic003G240100 Sobic003G240100 Sobic004G203500--Sobic003G240100 Sobic006G193500 Sobic006G193500 Sobic004G203500--Sobic006G193500 Sobic003G410700 Sobic003G410700 Sobic004G203500--Sobic003G410700 Sobic009G136700--Sobic003G131800 Sobic009G136700--Sobic002G075800 Sobic009G136500 Sobic009G136500 Sobic009G136700--Sobic009G136500 Sobic002G278800 Sobic002G278800 Sobic009G136700--Sobic002G278800 Sobic002G278700 Sobic002G278700 Sobic009G136700--Sobic002G278700 Sobic003G173700 Sobic003G173700 Sobic009G136700--Sobic003G173700 Sobic007G195300 Sobic007G195300 Sobic009G136700--Sobic007G195300 Sobic010G012400 Sobic010G012400 Sobic009G136700--Sobic010G012400 Sobic001G332966 Sobic001G332966 Sobic009G136700--Sobic001G332966 Sobic005G224500 Sobic005G224500 Sobic007G130800--Sobic005G224500 Sobic007G190200 Sobic007G190200 Sobic007G130800--Sobic007G190200 Sobic006G074300 Sobic006G074300 Sobic007G130800--Sobic006G074300 Sobic002G301200 Sobic002G301200 Sobic007G130800--Sobic002G301200 Sobic001G147300 Sobic001G147300 Sobic007G130800--Sobic001G147300 Sobic008G178800 Sobic008G178800 Sobic007G130800--Sobic008G178800 Sobic010G258500 Sobic010G258500 Sobic007G130800--Sobic010G258500 Sobic001G012200 Sobic001G012200 Sobic007G130800--Sobic001G012200 Sobic004G257700 Sobic004G257700 Sobic007G130800--Sobic004G257700 Sobic002G388600--Sobic002G225000 Sobic002G428900 Sobic002G428900 Sobic002G388600--Sobic002G428900 Sobic009G231100 Sobic009G231100 Sobic002G388600--Sobic009G231100 Sobic002G377300 Sobic002G377300 Sobic002G388600--Sobic002G377300 Sobic008G166050 Sobic008G166050 Sobic002G388600--Sobic008G166050 Sobic005G022000 Sobic005G022000 Sobic002G388600--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic002G388600--Sobic003G165800 Sobic007G050600 Sobic007G050600 Sobic002G388600--Sobic007G050600 Sobic002G388600--Sobic010G054000 Sobic002G075800--Sobic009G136700 Sobic008G029300 Sobic008G029300 Sobic002G075800--Sobic008G029300 Sobic002G173800 Sobic002G173800 Sobic002G075800--Sobic002G173800 Sobic002G075800--Sobic003G356000 Sobic009G161800 Sobic009G161800 Sobic002G075800--Sobic009G161800 Sobic002G075800--Sobic003G131800 Sobic002G164960 Sobic002G164960 Sobic002G075800--Sobic002G164960 Sobic008G087500 Sobic008G087500 Sobic002G075800--Sobic008G087500 Sobic002G075800--Sobic006G183200 Sobic003G356000--Sobic002G075800 Sobic003G198200 Sobic003G198200 Sobic003G356000--Sobic003G198200 Sobic002G148700 Sobic002G148700 Sobic003G356000--Sobic002G148700 Sobic003G356000--Sobic008G087500 Sobic003G356000--Sobic006G183200 Sobic003G356000--Sobic008G029300 Sobic004G116300 Sobic004G116300 Sobic003G356000--Sobic004G116300 Sobic003G356000--Sobic009G136700 Sobic004G124500 Sobic004G124500 Sobic003G356000--Sobic004G124500 Sobic004G295500--Sobic004G203500 Sobic004G295500--Sobic010G054000 Sobic004G295500--Sobic003G240100 Sobic004G295500--Sobic006G183200 Sobic003G094600 Sobic003G094600 Sobic004G295500--Sobic003G094600 Sobic003G389100 Sobic003G389100 Sobic004G295500--Sobic003G389100 Sobic002G193600 Sobic002G193600 Sobic004G295500--Sobic002G193600 Sobic009G026800 Sobic009G026800 Sobic004G295500--Sobic009G026800 Sobic004G295500--Sobic003G410700 Sobic003G131800--Sobic002G278700 Sobic003G131800--Sobic002G278800 Sobic008G030700 Sobic008G030700 Sobic003G131800--Sobic008G030700 Sobic006G175700 Sobic006G175700 Sobic003G131800--Sobic006G175700 Sobic003G131800--Sobic007G195300 Sobic003G131800--Sobic010G012400 Sobic003G131800--Sobic003G173700 Sobic001G249500 Sobic001G249500 Sobic003G131800--Sobic001G249500 Sobic003G131800--Sobic009G136500
Octagon: transcription factors


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