Gene annotation
Transcriptome id Sobic.004G295500.1
Synonym Sb04g032940, ethylene response factor 52, SbERF52
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt C5XRY4
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G44940 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g43970.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051074 , Zm00025a032199 , Zm00025a010156 , Zm00025a041340 , Zm00025a035855 , Zm00025a022970 , Zm00025a010312 , Zm00025a010316 , Zm00025a032313 , Zm00025a021501 , Zm00025a032201 , Zm00025a020883 , Zm00025a020881 , Zm00025a056876 , Zm00025a056875 , Zm00025a020882
Brachypodium KQK00606 , KQK00605 , KQK00604 , KQJ83928 , KQJ83932
Barley HORVU5Hr1G041600.1 , HORVU1Hr1G056090.1 , HORVU4Hr1G085910.2 , HORVU4Hr1G085910.1 , HORVU0Hr1G016370.1 , HORVU0Hr1G018290.1 , HORVU3Hr1G026950.1 , HORVU0Hr1G018280.1 , HORVU0Hr1G030500.1 , HORVU0Hr1G018240.1 , HORVU6Hr1G062940.1 , HORVU2Hr1G097850.6 , HORVU2Hr1G097850.5 , HORVU2Hr1G097850.4 , HORVU2Hr1G097850.3 , HORVU2Hr1G097850.1 , HORVU3Hr1G086870.2 , HORVU3Hr1G086870.1
Wheat TraesCS5B02G310900
Populus -


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cDNA sequences
Sobic.004G295500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
2 Sobic.010G054000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
3 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G183200 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.003G094600 glycosyltransferase protein, putative, expressed -
6 Sobic.003G389100 formin-like protein 1 precursor, putative, expressed -
7 Sobic.002G193600 endoglucanase, putative, expressed -
8 Sobic.009G026800 lectin protein kinase family protein, putative, expressed -
9 Sobic.003G410700 exostosin family domain containing protein, expressed -
10 Sobic.010G101400 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.001G312600 MLO domain containing protein, putative, expressed K08472: mlo protein
12 Sobic.001G509300 Tetratricopeptide repeat (TPR)-like superfamily protein(PubMedID : 26465154)@Tetratricopeptide repeat (TPR)-like superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@expressed protein -
13 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
14 Sobic.010G118300 auxin-independent growth promoter protein, putative, expressed -
15 Sobic.004G105200 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.007G050600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF6 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
17 Sobic.001G063500 fasciclin domain containing protein, expressed -
18 Sobic.001G460100 heparanase-like protein precursor, putative, expressed K07964: heparanase
19 Sobic.003G362300 expressed protein -
20 Sobic.006G164000 expressed protein -


Gene co-expression network
sample Sobic004G295500 Sobic004G295500 Sobic004G203500 Sobic004G203500 Sobic004G295500--Sobic004G203500 Sobic010G054000 Sobic010G054000 Sobic004G295500--Sobic010G054000 Sobic003G240100 Sobic003G240100 Sobic004G295500--Sobic003G240100 Sobic006G183200 Sobic006G183200 Sobic004G295500--Sobic006G183200 Sobic003G094600 Sobic003G094600 Sobic004G295500--Sobic003G094600 Sobic003G389100 Sobic003G389100 Sobic004G295500--Sobic003G389100 Sobic002G193600 Sobic002G193600 Sobic004G295500--Sobic002G193600 Sobic009G026800 Sobic009G026800 Sobic004G295500--Sobic009G026800 Sobic003G410700 Sobic003G410700 Sobic004G295500--Sobic003G410700 Sobic004G203500--Sobic004G295500 Sobic004G203500--Sobic010G054000 Sobic007G203000 Sobic007G203000 Sobic004G203500--Sobic007G203000 Sobic004G203500--Sobic006G183200 Sobic003G205300 Sobic003G205300 Sobic004G203500--Sobic003G205300 Sobic002G388600 Sobic002G388600 Sobic004G203500--Sobic002G388600 Sobic004G203500--Sobic003G240100 Sobic006G193500 Sobic006G193500 Sobic004G203500--Sobic006G193500 Sobic004G203500--Sobic003G410700 Sobic010G054000--Sobic006G183200 Sobic010G054000--Sobic004G203500 Sobic007G069200 Sobic007G069200 Sobic010G054000--Sobic007G069200 Sobic010G054000--Sobic002G388600 Sobic010G054000--Sobic007G203000 Sobic010G054000--Sobic004G295500 Sobic002G225000 Sobic002G225000 Sobic010G054000--Sobic002G225000 Sobic003G421201 Sobic003G421201 Sobic010G054000--Sobic003G421201 Sobic010G059200 Sobic010G059200 Sobic010G054000--Sobic010G059200 Sobic002G253900 Sobic002G253900 Sobic003G240100--Sobic002G253900 Sobic002G006100 Sobic002G006100 Sobic003G240100--Sobic002G006100 Sobic001G382400 Sobic001G382400 Sobic003G240100--Sobic001G382400 Sobic003G217500 Sobic003G217500 Sobic003G240100--Sobic003G217500 Sobic001G123100 Sobic001G123100 Sobic003G240100--Sobic001G123100 Sobic001G369800 Sobic001G369800 Sobic003G240100--Sobic001G369800 Sobic008G026400 Sobic008G026400 Sobic003G240100--Sobic008G026400 Sobic009G254000 Sobic009G254000 Sobic003G240100--Sobic009G254000 Sobic004G145300 Sobic004G145300 Sobic003G240100--Sobic004G145300 Sobic006G183200--Sobic010G054000 Sobic006G183200--Sobic004G203500 Sobic009G136700 Sobic009G136700 Sobic006G183200--Sobic009G136700 Sobic007G130800 Sobic007G130800 Sobic006G183200--Sobic007G130800 Sobic006G183200--Sobic002G388600 Sobic002G075800 Sobic002G075800 Sobic006G183200--Sobic002G075800 Sobic003G356000 Sobic003G356000 Sobic006G183200--Sobic003G356000 Sobic006G183200--Sobic004G295500 Sobic003G131800 Sobic003G131800 Sobic006G183200--Sobic003G131800 Sobic002G347900 Sobic002G347900 Sobic003G094600--Sobic002G347900 Sobic004G331900 Sobic004G331900 Sobic003G094600--Sobic004G331900 Sobic003G094600--Sobic003G410700 Sobic003G094600--Sobic003G389100 Sobic003G442300 Sobic003G442300 Sobic003G094600--Sobic003G442300 Sobic002G128000 Sobic002G128000 Sobic003G094600--Sobic002G128000 Sobic007G196800 Sobic007G196800 Sobic003G094600--Sobic007G196800 Sobic003G094600--Sobic003G240100 Sobic009G194200 Sobic009G194200 Sobic003G094600--Sobic009G194200 Sobic003G289800 Sobic003G289800 Sobic003G389100--Sobic003G289800 Sobic003G226700 Sobic003G226700 Sobic003G389100--Sobic003G226700 Sobic010G079100 Sobic010G079100 Sobic003G389100--Sobic010G079100 Sobic001G051300 Sobic001G051300 Sobic003G389100--Sobic001G051300 Sobic007G084200 Sobic007G084200 Sobic003G389100--Sobic007G084200 Sobic003G420300 Sobic003G420300 Sobic003G389100--Sobic003G420300 Sobic002G276600 Sobic002G276600 Sobic003G389100--Sobic002G276600 Sobic007G139500 Sobic007G139500 Sobic003G389100--Sobic007G139500 Sobic001G425700 Sobic001G425700 Sobic003G389100--Sobic001G425700 Sobic001G168500 Sobic001G168500 Sobic002G193600--Sobic001G168500 Sobic005G121200 Sobic005G121200 Sobic002G193600--Sobic005G121200 Sobic008G029300 Sobic008G029300 Sobic002G193600--Sobic008G029300 Sobic003G226300 Sobic003G226300 Sobic002G193600--Sobic003G226300 Sobic002G173800 Sobic002G173800 Sobic002G193600--Sobic002G173800 Sobic002G193600--Sobic002G075800 Sobic002G193600--Sobic004G203500 Sobic005G061033 Sobic005G061033 Sobic002G193600--Sobic005G061033 Sobic001G294600 Sobic001G294600 Sobic002G193600--Sobic001G294600 Sobic001G507000 Sobic001G507000 Sobic009G026800--Sobic001G507000 Sobic009G026800--Sobic007G139500 Sobic010G177100 Sobic010G177100 Sobic009G026800--Sobic010G177100 Sobic001G460100 Sobic001G460100 Sobic009G026800--Sobic001G460100 Sobic009G026800--Sobic001G051300 Sobic009G026800--Sobic010G079100 Sobic009G026800--Sobic003G389100 Sobic003G179500 Sobic003G179500 Sobic009G026800--Sobic003G179500 Sobic009G026800--Sobic003G226700 Sobic004G262600 Sobic004G262600 Sobic003G410700--Sobic004G262600 Sobic004G261200 Sobic004G261200 Sobic003G410700--Sobic004G261200 Sobic003G410700--Sobic009G194200 Sobic003G410700--Sobic003G389100 Sobic004G296200 Sobic004G296200 Sobic003G410700--Sobic004G296200 Sobic003G410700--Sobic003G094600 Sobic001G440500 Sobic001G440500 Sobic003G410700--Sobic001G440500 Sobic003G223900 Sobic003G223900 Sobic003G410700--Sobic003G223900 Sobic001G436100 Sobic001G436100 Sobic003G410700--Sobic001G436100
Octagon: transcription factors


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