Gene annotation
Transcriptome id Sobic.007G050600.1
Synonym CSLD2, ATCSLD2, Sb07g004110
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CSLF6 - cellulose synthase-like family F
beta1,3
1,4 glucan synthase, expressed
UniProt C5YHD7
Pfam PF03552
Panther DB PTHR13301 PTHR13301:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016760; cellulose synthase (UDP-forming) activity GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G03050 : cellulose synthase-like D3
RAP-DB (Rice) LOC_Os08g06380.1 : CSLF6 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
MaizeGDB (Corn) Zm00025a055112 , Zm00025a030058 , Zm00025a054306 , Zm00025a003543
Brachypodium PNT68814 , KQJ99839 , KQJ99838 , PNT68811 , KQJ99837 , KQJ95295 , KQK02740 , PNT68813 , KQJ99840 , KQJ86377 , PNT68812
Barley HORVU7Hr1G070010.5 , HORVU7Hr1G070010.4 , HORVU7Hr1G070010.7 , HORVU7Hr1G070010.6 , HORVU7Hr1G070010.1 , HORVU7Hr1G070010.3 , HORVU7Hr1G070010.2 , HORVU7Hr1G070010.9 , HORVU7Hr1G070010.8 , HORVU0Hr1G011610.1 , HORVU7Hr1G121040.6 , HORVU7Hr1G121040.5 , HORVU7Hr1G121040.4 , HORVU7Hr1G121040.3 , HORVU7Hr1G121040.2 , HORVU7Hr1G121040.1 , HORVU5Hr1G023640.2 , HORVU5Hr1G023640.6 , HORVU5Hr1G023640.1 , HORVU5Hr1G023640.3 , HORVU5Hr1G023640.8 , HORVU5Hr1G023640.9 , HORVU5Hr1G023640.7 , HORVU5Hr1G023640.4 , HORVU5Hr1G023640.5
Wheat TraesCS7D02G555000 , TraesCS2A02G122600 , TraesCS2D02G126100 , TraesCS5D02G102600 , TraesCSU02G003300 , TraesCS7A02G298600 , TraesCS5A02G090500 , TraesCS2A02G565500 , TraesCS1D02G107100 , TraesCS1D02G146600 , TraesCS1D02G146600 , TraesCS5B02G096200 , TraesCS1B02G185200 , TraesCS7D02G294300 , TraesCS7B02G188400 , TraesCS7B02G188400 , TraesCS7B02G188400 , TraesCS7B02G188400
Populus -


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cDNA sequences
Sobic.007G050600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G460000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.001G334900 X8 domain containing protein, expressed -
3 Sobic.004G295700 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.004G296200 inactive receptor kinase At2g26730 precursor, putative, expressed -
6 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
7 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.004G257700 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
9 Sobic.010G228100 "DEP3(Ortholog in rice:Qiao et al., 2011)"(PubMedID : 31659937)@PLA IIIA/PLP7, putative, expressed -
10 Sobic.002G118700 -(PubMedID : 28944535)@CESA3 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.001G012200 similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
12 Sobic.009G161100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.009G125900 expressed protein -
14 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
15 Sobic.010G123300 expressed protein -
16 Sobic.009G130600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
19 Sobic.007G069500 expressed protein -
20 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -


Gene co-expression network
sample Sobic007G050600 Sobic007G050600 Sobic001G460000 Sobic001G460000 Sobic007G050600--Sobic001G460000 Sobic001G334900 Sobic001G334900 Sobic007G050600--Sobic001G334900 Sobic004G295700 Sobic004G295700 Sobic007G050600--Sobic004G295700 Sobic009G063400 Sobic009G063400 Sobic007G050600--Sobic009G063400 Sobic004G296200 Sobic004G296200 Sobic007G050600--Sobic004G296200 Sobic009G232200 Sobic009G232200 Sobic007G050600--Sobic009G232200 Sobic001G012600 Sobic001G012600 Sobic007G050600--Sobic001G012600 Sobic004G257700 Sobic004G257700 Sobic007G050600--Sobic004G257700 Sobic010G228100 Sobic010G228100 Sobic007G050600--Sobic010G228100 Sobic001G460000--Sobic007G050600 Sobic002G118700 Sobic002G118700 Sobic001G460000--Sobic002G118700 Sobic001G460000--Sobic009G063400 Sobic001G460000--Sobic004G295700 Sobic002G075500 Sobic002G075500 Sobic001G460000--Sobic002G075500 Sobic001G460000--Sobic001G334900 Sobic002G321400 Sobic002G321400 Sobic001G460000--Sobic002G321400 Sobic001G460000--Sobic004G296200 Sobic004G265600 Sobic004G265600 Sobic001G460000--Sobic004G265600 Sobic001G334900--Sobic009G232200 Sobic001G334900--Sobic001G012600 Sobic001G334900--Sobic010G228100 Sobic001G208600 Sobic001G208600 Sobic001G334900--Sobic001G208600 Sobic009G033400 Sobic009G033400 Sobic001G334900--Sobic009G033400 Sobic002G347300 Sobic002G347300 Sobic001G334900--Sobic002G347300 Sobic001G334900--Sobic007G050600 Sobic001G012200 Sobic001G012200 Sobic001G334900--Sobic001G012200 Sobic001G334900--Sobic009G063400 Sobic004G295700--Sobic007G050600 Sobic004G295700--Sobic001G460000 Sobic007G180900 Sobic007G180900 Sobic004G295700--Sobic007G180900 Sobic009G136700 Sobic009G136700 Sobic004G295700--Sobic009G136700 Sobic004G295700--Sobic002G118700 Sobic003G362300 Sobic003G362300 Sobic004G295700--Sobic003G362300 Sobic004G295700--Sobic004G296200 Sobic002G110100 Sobic002G110100 Sobic004G295700--Sobic002G110100 Sobic007G130800 Sobic007G130800 Sobic004G295700--Sobic007G130800 Sobic009G125900 Sobic009G125900 Sobic009G063400--Sobic009G125900 Sobic009G063400--Sobic002G075500 Sobic009G026101 Sobic009G026101 Sobic009G063400--Sobic009G026101 Sobic009G063400--Sobic002G118700 Sobic010G096100 Sobic010G096100 Sobic009G063400--Sobic010G096100 Sobic009G063400--Sobic001G334900 Sobic010G090500 Sobic010G090500 Sobic009G063400--Sobic010G090500 Sobic009G063400--Sobic001G208600 Sobic006G075000 Sobic006G075000 Sobic009G063400--Sobic006G075000 Sobic004G296200--Sobic003G362300 Sobic008G024300 Sobic008G024300 Sobic004G296200--Sobic008G024300 Sobic003G410700 Sobic003G410700 Sobic004G296200--Sobic003G410700 Sobic004G296200--Sobic007G050600 Sobic004G296200--Sobic001G460000 Sobic004G262600 Sobic004G262600 Sobic004G296200--Sobic004G262600 Sobic004G296200--Sobic007G180900 Sobic004G261200 Sobic004G261200 Sobic004G296200--Sobic004G261200 Sobic001G021500 Sobic001G021500 Sobic004G296200--Sobic001G021500 Sobic009G232200--Sobic001G334900 Sobic009G232200--Sobic002G347300 Sobic002G338400 Sobic002G338400 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic001G012600--Sobic001G012200 Sobic001G012600--Sobic001G334900 Sobic001G012300 Sobic001G012300 Sobic001G012600--Sobic001G012300 Sobic001G012600--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic001G012600--Sobic009G232200 Sobic001G345900 Sobic001G345900 Sobic001G012600--Sobic001G345900 Sobic001G012600--Sobic004G257700 Sobic005G190800 Sobic005G190800 Sobic004G257700--Sobic005G190800 Sobic002G128600 Sobic002G128600 Sobic004G257700--Sobic002G128600 Sobic001G472000 Sobic001G472000 Sobic004G257700--Sobic001G472000 Sobic008G189500 Sobic008G189500 Sobic004G257700--Sobic008G189500 Sobic001G068600 Sobic001G068600 Sobic004G257700--Sobic001G068600 Sobic005G029400 Sobic005G029400 Sobic004G257700--Sobic005G029400 Sobic005G218201 Sobic005G218201 Sobic004G257700--Sobic005G218201 Sobic005G218600 Sobic005G218600 Sobic004G257700--Sobic005G218600 Sobic001G255300 Sobic001G255300 Sobic004G257700--Sobic001G255300 Sobic010G228100--Sobic001G334900 Sobic003G006100 Sobic003G006100 Sobic010G228100--Sobic003G006100 Sobic001G037400 Sobic001G037400 Sobic010G228100--Sobic001G037400 Sobic010G228100--Sobic009G232200 Sobic004G243800 Sobic004G243800 Sobic010G228100--Sobic004G243800 Sobic010G228100--Sobic009G033400 Sobic010G228100--Sobic004G168700 Sobic003G031400 Sobic003G031400 Sobic010G228100--Sobic003G031400 Sobic010G228100--Sobic010G096100
Octagon: transcription factors


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