Gene annotation
Transcriptome id Sobic.004G168700.1
Synonym Sb04g022010
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt C5XU17
Pfam PF03168
Panther DB PTHR31415 PTHR31415:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44220 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os02g33550.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011473 , Zm00025a056018 , Zm00025a020582
Brachypodium KQJ82559 , KQJ99772
Barley HORVU5Hr1G114220.1 , HORVU2Hr1G073830.3 , HORVU2Hr1G073830.2 , HORVU2Hr1G073830.1 , HORVU2Hr1G040910.2 , HORVU2Hr1G040910.1
Wheat TraesCS2D02G295700 , TraesCS2B02G313900 , TraesCS2A02G297700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
4 Sobic.008G082400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
5 Sobic.009G211800 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.002G072200 expressed protein -
7 Sobic.004G243800 HEAT repeat family protein, putative, expressed -
8 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
9 Sobic.003G108000 expressed protein -
10 Sobic.001G334900 X8 domain containing protein, expressed -
11 Sobic.010G228100 "DEP3(Ortholog in rice:Qiao et al., 2011)"(PubMedID : 31659937)@PLA IIIA/PLP7, putative, expressed -
12 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
13 Sobic.002G276600 endoglucanase, putative, expressed -
14 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.001G405000 MRH1, putative, expressed -
17 Sobic.003G071400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
18 Sobic.008G163000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR57 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G037400 expressed protein -


Gene co-expression network
sample Sobic004G168700 Sobic004G168700 Sobic010G086800 Sobic010G086800 Sobic004G168700--Sobic010G086800 Sobic009G032600 Sobic009G032600 Sobic004G168700--Sobic009G032600 Sobic009G232200 Sobic009G232200 Sobic004G168700--Sobic009G232200 Sobic008G082400 Sobic008G082400 Sobic004G168700--Sobic008G082400 Sobic009G211800 Sobic009G211800 Sobic004G168700--Sobic009G211800 Sobic002G072200 Sobic002G072200 Sobic004G168700--Sobic002G072200 Sobic004G243800 Sobic004G243800 Sobic004G168700--Sobic004G243800 Sobic009G226900 Sobic009G226900 Sobic004G168700--Sobic009G226900 Sobic003G108000 Sobic003G108000 Sobic004G168700--Sobic003G108000 Sobic003G062000 Sobic003G062000 Sobic010G086800--Sobic003G062000 Sobic010G086800--Sobic004G168700 Sobic010G086800--Sobic009G032600 Sobic006G036400 Sobic006G036400 Sobic010G086800--Sobic006G036400 Sobic010G086800--Sobic009G226900 Sobic003G427900 Sobic003G427900 Sobic010G086800--Sobic003G427900 Sobic010G086800--Sobic002G072200 Sobic001G107100 Sobic001G107100 Sobic010G086800--Sobic001G107100 Sobic009G162500 Sobic009G162500 Sobic010G086800--Sobic009G162500 Sobic009G032600--Sobic002G072200 Sobic009G032600--Sobic010G086800 Sobic009G032600--Sobic004G168700 Sobic009G032600--Sobic003G062000 Sobic009G032600--Sobic009G232200 Sobic009G032600--Sobic009G226900 Sobic006G075000 Sobic006G075000 Sobic009G032600--Sobic006G075000 Sobic004G319600 Sobic004G319600 Sobic009G032600--Sobic004G319600 Sobic009G032600--Sobic006G036400 Sobic001G334900 Sobic001G334900 Sobic009G232200--Sobic001G334900 Sobic002G347300 Sobic002G347300 Sobic009G232200--Sobic002G347300 Sobic002G338400 Sobic002G338400 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic009G232200--Sobic006G075000 Sobic009G232200--Sobic004G168700 Sobic009G232200--Sobic002G072200 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic001G265900 Sobic001G265900 Sobic008G082400--Sobic001G265900 Sobic008G082400--Sobic004G168700 Sobic005G147800 Sobic005G147800 Sobic008G082400--Sobic005G147800 Sobic007G142300 Sobic007G142300 Sobic008G082400--Sobic007G142300 Sobic009G161100 Sobic009G161100 Sobic008G082400--Sobic009G161100 Sobic010G165100 Sobic010G165100 Sobic008G082400--Sobic010G165100 Sobic009G055900 Sobic009G055900 Sobic008G082400--Sobic009G055900 Sobic002G397400 Sobic002G397400 Sobic008G082400--Sobic002G397400 Sobic010G196400 Sobic010G196400 Sobic008G082400--Sobic010G196400 Sobic009G211800--Sobic004G243800 Sobic008G039800 Sobic008G039800 Sobic009G211800--Sobic008G039800 Sobic003G277200 Sobic003G277200 Sobic009G211800--Sobic003G277200 Sobic001G037400 Sobic001G037400 Sobic009G211800--Sobic001G037400 Sobic002G045200 Sobic002G045200 Sobic009G211800--Sobic002G045200 Sobic009G211800--Sobic004G168700 Sobic001G201000 Sobic001G201000 Sobic009G211800--Sobic001G201000 Sobic007G107950 Sobic007G107950 Sobic009G211800--Sobic007G107950 Sobic010G211800 Sobic010G211800 Sobic009G211800--Sobic010G211800 Sobic002G072200--Sobic009G032600 Sobic002G072200--Sobic006G075000 Sobic002G072200--Sobic003G062000 Sobic002G072200--Sobic009G226900 Sobic002G072200--Sobic009G232200 Sobic002G072200--Sobic006G036400 Sobic002G072200--Sobic010G086800 Sobic001G208600 Sobic001G208600 Sobic002G072200--Sobic001G208600 Sobic003G099166 Sobic003G099166 Sobic002G072200--Sobic003G099166 Sobic001G437500 Sobic001G437500 Sobic004G243800--Sobic001G437500 Sobic004G243800--Sobic001G037400 Sobic001G196000 Sobic001G196000 Sobic004G243800--Sobic001G196000 Sobic004G243800--Sobic010G165100 Sobic002G276600 Sobic002G276600 Sobic004G243800--Sobic002G276600 Sobic004G243800--Sobic009G211800 Sobic008G174900 Sobic008G174900 Sobic004G243800--Sobic008G174900 Sobic004G243800--Sobic002G045200 Sobic002G142500 Sobic002G142500 Sobic004G243800--Sobic002G142500 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic009G226900--Sobic006G075000 Sobic009G151000 Sobic009G151000 Sobic003G108000--Sobic009G151000 Sobic003G108000--Sobic010G196400 Sobic009G119400 Sobic009G119400 Sobic003G108000--Sobic009G119400 Sobic001G275600 Sobic001G275600 Sobic003G108000--Sobic001G275600 Sobic008G163000 Sobic008G163000 Sobic003G108000--Sobic008G163000 Sobic003G108000--Sobic004G168700 Sobic006G001000 Sobic006G001000 Sobic003G108000--Sobic006G001000 Sobic001G307300 Sobic001G307300 Sobic003G108000--Sobic001G307300 Sobic003G085200 Sobic003G085200 Sobic003G108000--Sobic003G085200
Octagon: transcription factors


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