Gene annotation
Transcriptome id Sobic.002G118700.2,Sobic.002G118700.3,Sobic.002G118700.1
Synonym ATCESA2, CesA2, ATH-A, CESA2, Sb02g010110
Functional annotation - (PubMedID : 28944535)
CESA3 - cellulose synthase, expressed
UniProt A0A1B6QAN9 , A0A1B6QAN8 , A0A1B6QAN4 , A0A2U9QI31
Pfam PF14569 PF03552 PF13632 PF14569
Panther DB PTHR13301 PTHR13301:SF73
NCBI CDD -
KEGG Orthology K10999; cellulose synthase A
Gene Ontology GO:0016760; cellulose synthase (UDP-forming) activity GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G64740 : cellulose synthase 6
RAP-DB (Rice) LOC_Os07g24190.1 : CESA3 - cellulose synthase, expressed
MaizeGDB (Corn) Zm00025a008946 , Zm00025a013593 , Zm00025a013618 , Zm00025a045761 , Zm00025a032075 , Zm00025a045530 , Zm00025a009576 , Zm00025a013935 , Zm00025a047054
Brachypodium KQK20392 , KQK12260 , KQK12261 , PNT64610 , KQK20229 , KQK16504 , KQK16503 , KQK16502 , KQK16501 , PNT75244 , PNT75245 , PNT75246
Barley HORVU5Hr1G064230.8 , HORVU5Hr1G064230.9 , HORVU5Hr1G064230.3 , HORVU5Hr1G064230.6 , HORVU5Hr1G064230.7 , HORVU5Hr1G064230.4 , HORVU6Hr1G050750.1 , HORVU6Hr1G050750.3 , HORVU6Hr1G050750.2 , HORVU6Hr1G050750.5 , HORVU6Hr1G050750.4 , HORVU6Hr1G050750.7 , HORVU6Hr1G050750.6 , HORVU6Hr1G050750.9 , HORVU6Hr1G050750.8 , HORVU5Hr1G118270.21 , HORVU5Hr1G118270.20 , HORVU5Hr1G118270.23 , HORVU5Hr1G118270.22 , HORVU5Hr1G118270.25 , HORVU5Hr1G118270.24 , HORVU5Hr1G118270.27 , HORVU5Hr1G118270.26 , HORVU5Hr1G118270.29 , HORVU5Hr1G118270.28 , HORVU6Hr1G050750.20 , HORVU6Hr1G050750.21 , HORVU6Hr1G050750.22 , HORVU5Hr1G064230.18 , HORVU5Hr1G064230.19 , HORVU5Hr1G064230.10 , HORVU5Hr1G064230.11 , HORVU5Hr1G064230.12 , HORVU5Hr1G064230.13 , HORVU5Hr1G064230.15 , HORVU5Hr1G064230.16 , HORVU5Hr1G064230.17 , HORVU6Hr1G050750.14 , HORVU6Hr1G050750.11 , HORVU6Hr1G050750.10 , HORVU6Hr1G050750.13 , HORVU6Hr1G050750.19 , HORVU6Hr1G050750.18 , HORVU5Hr1G064230.21 , HORVU5Hr1G064230.20 , HORVU5Hr1G064230.22 , HORVU5Hr1G118270.30 , HORVU6Hr1G050750.15 , HORVU6Hr1G050750.17 , HORVU6Hr1G050750.16 , HORVU6Hr1G050750.12 , HORVU5Hr1G118270.6 , HORVU5Hr1G118270.7 , HORVU5Hr1G118270.4 , HORVU5Hr1G118270.5 , HORVU5Hr1G118270.2 , HORVU5Hr1G118270.3 , HORVU5Hr1G118270.1 , HORVU5Hr1G118270.8 , HORVU5Hr1G118270.9 , HORVU5Hr1G118270.19 , HORVU5Hr1G118270.14 , HORVU5Hr1G118270.15 , HORVU5Hr1G118270.16 , HORVU5Hr1G118270.17 , HORVU5Hr1G118270.10 , HORVU5Hr1G118270.11 , HORVU5Hr1G118270.12 , HORVU5Hr1G118270.13
Wheat TraesCS5D02G517200 , TraesCS5D02G517200 , TraesCS2A02G102600 , TraesCS2D02G102100 , TraesCS2D02G102100 , TraesCS2D02G102100 , TraesCS5B02G221600 , TraesCS5B02G221600 , TraesCS5B02G221600 , TraesCS2B02G119700 , TraesCS2B02G119700 , TraesCS2B02G119700 , TraesCSU02G142500 , TraesCS5A02G222500 , TraesCS4A02G355000 , TraesCS5B02G517500 , TraesCS5B02G517500 , TraesCS5B02G517500 , TraesCS4A02G355000 , TraesCS4A02G355000 , TraesCS4A02G355000 , TraesCS5D02G517200
Populus PNT29855 , PNT29856 , PNT34627 , PNT34626 , PNT06230 , PNT06234 , PNT06233 , PNT06232 , PNT06231 , PNS98015 , PNS98014 , PNS98017 , PNS98016


JBrowse

Open New Page


cDNA sequences
Sobic.002G118700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
2 Sobic.009G125900 expressed protein -
3 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.001G099100 endoglucanase, putative, expressed K01179: endoglucanase
5 Sobic.004G051300 galactosyltransferase, putative, expressed -
6 Sobic.009G026101 - -
7 Sobic.010G090500 expressed protein -
8 Sobic.007G180900 BAG domain-containing protein, putative, expressed -
9 Sobic.002G276600 endoglucanase, putative, expressed -
10 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.003G136600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
14 Sobic.001G460000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.007G211600 expressed protein -
16 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.007G050600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF6 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
18 Sobic.001G334900 X8 domain containing protein, expressed -
19 Sobic.010G050900 harpin-induced protein, putative, expressed -
20 Sobic.001G313301 - -


Gene co-expression network
sample Sobic002G118700 Sobic002G118700 Sobic009G063400 Sobic009G063400 Sobic002G118700--Sobic009G063400 Sobic009G125900 Sobic009G125900 Sobic002G118700--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic002G118700--Sobic002G075500 Sobic001G099100 Sobic001G099100 Sobic002G118700--Sobic001G099100 Sobic004G051300 Sobic004G051300 Sobic002G118700--Sobic004G051300 Sobic009G026101 Sobic009G026101 Sobic002G118700--Sobic009G026101 Sobic010G090500 Sobic010G090500 Sobic002G118700--Sobic010G090500 Sobic007G180900 Sobic007G180900 Sobic002G118700--Sobic007G180900 Sobic002G276600 Sobic002G276600 Sobic002G118700--Sobic002G276600 Sobic009G063400--Sobic009G125900 Sobic009G063400--Sobic002G075500 Sobic009G063400--Sobic009G026101 Sobic009G063400--Sobic002G118700 Sobic010G096100 Sobic010G096100 Sobic009G063400--Sobic010G096100 Sobic001G334900 Sobic001G334900 Sobic009G063400--Sobic001G334900 Sobic009G063400--Sobic010G090500 Sobic001G208600 Sobic001G208600 Sobic009G063400--Sobic001G208600 Sobic006G075000 Sobic006G075000 Sobic009G063400--Sobic006G075000 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic009G125900--Sobic004G051300 Sobic003G254700 Sobic003G254700 Sobic009G125900--Sobic003G254700 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G075500--Sobic002G118700 Sobic002G075500--Sobic009G026101 Sobic002G075500--Sobic004G051300 Sobic002G075500--Sobic001G099100 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic006G156600 Sobic006G156600 Sobic002G075500--Sobic006G156600 Sobic001G099100--Sobic004G051300 Sobic001G099100--Sobic002G118700 Sobic001G099100--Sobic002G276600 Sobic001G099100--Sobic002G075500 Sobic001G099100--Sobic010G090500 Sobic001G099100--Sobic009G026101 Sobic001G099100--Sobic009G125900 Sobic003G353400 Sobic003G353400 Sobic001G099100--Sobic003G353400 Sobic009G079100 Sobic009G079100 Sobic001G099100--Sobic009G079100 Sobic004G051300--Sobic001G099100 Sobic004G051300--Sobic002G118700 Sobic004G051300--Sobic009G125900 Sobic004G051300--Sobic002G075500 Sobic004G051300--Sobic009G026101 Sobic004G051300--Sobic002G276600 Sobic004G051300--Sobic009G079100 Sobic004G051300--Sobic010G090500 Sobic004G051300--Sobic009G063400 Sobic001G133900 Sobic001G133900 Sobic009G026101--Sobic001G133900 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G246700 Sobic009G246700 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic009G026101--Sobic003G254700 Sobic009G026101--Sobic010G096100 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic010G090500--Sobic009G079100 Sobic001G437500 Sobic001G437500 Sobic010G090500--Sobic001G437500 Sobic006G267500 Sobic006G267500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic009G061000 Sobic009G061000 Sobic010G090500--Sobic009G061000 Sobic010G090500--Sobic009G125900 Sobic003G144600 Sobic003G144600 Sobic007G180900--Sobic003G144600 Sobic007G180900--Sobic002G075500 Sobic002G187400 Sobic002G187400 Sobic007G180900--Sobic002G187400 Sobic007G180900--Sobic002G118700 Sobic004G261200 Sobic004G261200 Sobic007G180900--Sobic004G261200 Sobic004G257800 Sobic004G257800 Sobic007G180900--Sobic004G257800 Sobic003G198400 Sobic003G198400 Sobic007G180900--Sobic003G198400 Sobic009G099000 Sobic009G099000 Sobic007G180900--Sobic009G099000 Sobic007G180900--Sobic003G353400 Sobic002G276600--Sobic009G061000 Sobic002G276600--Sobic001G437500 Sobic002G276600--Sobic001G099100 Sobic008G174900 Sobic008G174900 Sobic002G276600--Sobic008G174900 Sobic002G276600--Sobic006G267500 Sobic004G243800 Sobic004G243800 Sobic002G276600--Sobic004G243800 Sobic002G276600--Sobic009G026101 Sobic002G276600--Sobic004G051300 Sobic002G276600--Sobic010G090500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.