Gene annotation
Transcriptome id Sobic.008G135701.1
Synonym -
Functional annotation -
UniProt A0A1Z5R7F2
Pfam PF06026
Panther DB PTHR11934 PTHR11934:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009052; pentose-phosphate shunt, non-oxidative branch GO:0004751ribose-5-phosphate isomerase activity


Orthologs (automatic annotation)
TAIR AT1G71100 : Ribose 5-phosphate isomerase, type A protein
RAP-DB (Rice) LOC_Os04g24140.1 : ribose-5-phosphate isomerase A, putative, expressed
MaizeGDB (Corn) Zm00025a004238 , Zm00025a033449 , Zm00025a013042
Brachypodium -
Barley HORVU2Hr1G066480.1 , HORVU2Hr1G066480.2 , HORVU2Hr1G066480.3 , HORVU2Hr1G066480.4 , HORVU2Hr1G066480.5 , HORVU2Hr1G066480.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
2 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
3 Sobic.007G172600 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
4 Sobic.002G317600 endoribonuclease, putative, expressed -
5 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
6 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
7 Sobic.002G253100 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
8 Sobic.008G173000 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
9 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
10 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
11 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
12 Sobic.001G311833 - -
13 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
14 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
15 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
16 Sobic.003G098600 expressed protein -
17 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
18 Sobic.006G223500 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
20 Sobic.004G203900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase


Gene co-expression network
sample Sobic008G135701 Sobic008G135701 Sobic007G166600 Sobic007G166600 Sobic008G135701--Sobic007G166600 Sobic001G463500 Sobic001G463500 Sobic008G135701--Sobic001G463500 Sobic007G172600 Sobic007G172600 Sobic008G135701--Sobic007G172600 Sobic002G317600 Sobic002G317600 Sobic008G135701--Sobic002G317600 Sobic006G216000 Sobic006G216000 Sobic008G135701--Sobic006G216000 Sobic003G420900 Sobic003G420900 Sobic008G135701--Sobic003G420900 Sobic002G253100 Sobic002G253100 Sobic008G135701--Sobic002G253100 Sobic008G173000 Sobic008G173000 Sobic008G135701--Sobic008G173000 Sobic008G083400 Sobic008G083400 Sobic008G135701--Sobic008G083400 Sobic007G166600--Sobic008G135701 Sobic004G319800 Sobic004G319800 Sobic007G166600--Sobic004G319800 Sobic009G055900 Sobic009G055900 Sobic007G166600--Sobic009G055900 Sobic001G104300 Sobic001G104300 Sobic007G166600--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic007G166600--Sobic005G022000 Sobic007G026200 Sobic007G026200 Sobic007G166600--Sobic007G026200 Sobic005G105850 Sobic005G105850 Sobic007G166600--Sobic005G105850 Sobic007G211100 Sobic007G211100 Sobic007G166600--Sobic007G211100 Sobic010G202700 Sobic010G202700 Sobic007G166600--Sobic010G202700 Sobic004G296800 Sobic004G296800 Sobic001G463500--Sobic004G296800 Sobic001G463500--Sobic008G135701 Sobic002G330500 Sobic002G330500 Sobic001G463500--Sobic002G330500 Sobic001G008700 Sobic001G008700 Sobic001G463500--Sobic001G008700 Sobic001G463500--Sobic003G420900 Sobic001G543700 Sobic001G543700 Sobic001G463500--Sobic001G543700 Sobic001G011300 Sobic001G011300 Sobic001G463500--Sobic001G011300 Sobic001G463500--Sobic002G253100 Sobic002G333100 Sobic002G333100 Sobic001G463500--Sobic002G333100 Sobic001G115500 Sobic001G115500 Sobic007G172600--Sobic001G115500 Sobic008G125100 Sobic008G125100 Sobic007G172600--Sobic008G125100 Sobic001G471600 Sobic001G471600 Sobic007G172600--Sobic001G471600 Sobic007G172600--Sobic008G135701 Sobic007G172600--Sobic002G317600 Sobic007G172600--Sobic008G083400 Sobic009G122900 Sobic009G122900 Sobic007G172600--Sobic009G122900 Sobic004G067400 Sobic004G067400 Sobic007G172600--Sobic004G067400 Sobic001G469200 Sobic001G469200 Sobic007G172600--Sobic001G469200 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic008G075200 Sobic008G075200 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic008G181400 Sobic008G181400 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic001G152000 Sobic001G152000 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic003G420900--Sobic001G543700 Sobic002G253100--Sobic006G216000 Sobic007G119900 Sobic007G119900 Sobic002G253100--Sobic007G119900 Sobic005G132700 Sobic005G132700 Sobic002G253100--Sobic005G132700 Sobic002G253100--Sobic001G152000 Sobic002G402500 Sobic002G402500 Sobic002G253100--Sobic002G402500 Sobic006G020900 Sobic006G020900 Sobic002G253100--Sobic006G020900 Sobic002G253100--Sobic003G119400 Sobic001G404200 Sobic001G404200 Sobic002G253100--Sobic001G404200 Sobic004G248900 Sobic004G248900 Sobic002G253100--Sobic004G248900 Sobic001G226100 Sobic001G226100 Sobic008G173000--Sobic001G226100 Sobic010G012600 Sobic010G012600 Sobic008G173000--Sobic010G012600 Sobic008G173000--Sobic006G252100 Sobic008G173000--Sobic001G296400 Sobic004G185600 Sobic004G185600 Sobic008G173000--Sobic004G185600 Sobic010G251100 Sobic010G251100 Sobic008G173000--Sobic010G251100 Sobic001G263000 Sobic001G263000 Sobic008G173000--Sobic001G263000 Sobic003G045400 Sobic003G045400 Sobic008G173000--Sobic003G045400 Sobic008G173000--Sobic006G216000 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic001G371100 Sobic001G371100 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800
Octagon: transcription factors


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