Gene annotation
Transcriptome id Sobic.004G203900.1
Synonym Sb04g025020, YBR159, ATKCR1, KCR1
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
UniProt C5XX43
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF591
NCBI CDD KOG1014; 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3
KEGG Orthology K10251; HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67730 : beta-ketoacyl reductase 1
RAP-DB (Rice) LOC_Os02g38440.1 : oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
MaizeGDB (Corn) Zm00025a021292 , Zm00025a031859
Brachypodium PNT61320 , PNT68970 , PNT68969
Barley HORVU6Hr1G054000.1 , HORVU6Hr1G054000.3 , HORVU6Hr1G054000.2 , HORVU6Hr1G054000.5 , HORVU6Hr1G054000.4 , HORVU6Hr1G054000.7 , HORVU6Hr1G054000.6 , HORVU6Hr1G054000.9 , HORVU6Hr1G054000.8 , HORVU2Hr1G083810.1
Wheat TraesCS2B02G361100 , TraesCS6A02G213100 , TraesCS7D02G076100 , TraesCS2D02G342100 , TraesCS2D02G342200 , TraesCS6D02G194600 , TraesCS2B02G361200 , TraesCS7D02G088400 , TraesCS6B02G241000 , TraesCS2A02G321300
Populus -


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cDNA sequences
Sobic.004G203900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G071400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
2 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
4 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.006G038200 receptor protein kinase, putative, expressed -
6 Sobic.008G000100 monoglyceride lipase, putative, expressed -
7 Sobic.002G347400 expressed protein -
8 Sobic.003G098600 expressed protein -
9 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
11 Sobic.001G405000 MRH1, putative, expressed -
12 Sobic.010G123300 expressed protein -
13 Sobic.005G204700 polygalacturonase, putative, expressed -
14 Sobic.001G408800 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
16 Sobic.008G143600 expressed protein -
17 Sobic.003G149000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
18 Sobic.008G039800 rhoGAP domain containing protein, expressed -
19 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
20 Sobic.003G223100 polygalacturonase, putative, expressed -


Gene co-expression network
sample Sobic004G203900 Sobic004G203900 Sobic003G071400 Sobic003G071400 Sobic004G203900--Sobic003G071400 Sobic004G265600 Sobic004G265600 Sobic004G203900--Sobic004G265600 Sobic003G151300 Sobic003G151300 Sobic004G203900--Sobic003G151300 Sobic009G032600 Sobic009G032600 Sobic004G203900--Sobic009G032600 Sobic006G038200 Sobic006G038200 Sobic004G203900--Sobic006G038200 Sobic008G000100 Sobic008G000100 Sobic004G203900--Sobic008G000100 Sobic002G347400 Sobic002G347400 Sobic004G203900--Sobic002G347400 Sobic003G098600 Sobic003G098600 Sobic004G203900--Sobic003G098600 Sobic004G168700 Sobic004G168700 Sobic004G203900--Sobic004G168700 Sobic003G071400--Sobic004G203900 Sobic001G405000 Sobic001G405000 Sobic003G071400--Sobic001G405000 Sobic003G071400--Sobic004G168700 Sobic001G376700 Sobic001G376700 Sobic003G071400--Sobic001G376700 Sobic009G055900 Sobic009G055900 Sobic003G071400--Sobic009G055900 Sobic003G108000 Sobic003G108000 Sobic003G071400--Sobic003G108000 Sobic002G003200 Sobic002G003200 Sobic003G071400--Sobic002G003200 Sobic003G420900 Sobic003G420900 Sobic003G071400--Sobic003G420900 Sobic004G319800 Sobic004G319800 Sobic003G071400--Sobic004G319800 Sobic009G125900 Sobic009G125900 Sobic004G265600--Sobic009G125900 Sobic001G116000 Sobic001G116000 Sobic004G265600--Sobic001G116000 Sobic009G063400 Sobic009G063400 Sobic004G265600--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic004G265600--Sobic009G026101 Sobic004G265600--Sobic004G203900 Sobic002G075500 Sobic002G075500 Sobic004G265600--Sobic002G075500 Sobic003G254700 Sobic003G254700 Sobic004G265600--Sobic003G254700 Sobic010G090500 Sobic010G090500 Sobic004G265600--Sobic010G090500 Sobic008G174900 Sobic008G174900 Sobic004G265600--Sobic008G174900 Sobic009G026200 Sobic009G026200 Sobic003G151300--Sobic009G026200 Sobic008G008400 Sobic008G008400 Sobic003G151300--Sobic008G008400 Sobic008G174800 Sobic008G174800 Sobic003G151300--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic003G151300--Sobic010G224900 Sobic009G162500 Sobic009G162500 Sobic003G151300--Sobic009G162500 Sobic001G107200 Sobic001G107200 Sobic003G151300--Sobic001G107200 Sobic008G021900 Sobic008G021900 Sobic003G151300--Sobic008G021900 Sobic003G151300--Sobic004G203900 Sobic004G134100 Sobic004G134100 Sobic003G151300--Sobic004G134100 Sobic002G072200 Sobic002G072200 Sobic009G032600--Sobic002G072200 Sobic010G086800 Sobic010G086800 Sobic009G032600--Sobic010G086800 Sobic009G032600--Sobic004G168700 Sobic003G062000 Sobic003G062000 Sobic009G032600--Sobic003G062000 Sobic009G232200 Sobic009G232200 Sobic009G032600--Sobic009G232200 Sobic009G226900 Sobic009G226900 Sobic009G032600--Sobic009G226900 Sobic006G075000 Sobic006G075000 Sobic009G032600--Sobic006G075000 Sobic004G319600 Sobic004G319600 Sobic009G032600--Sobic004G319600 Sobic006G036400 Sobic006G036400 Sobic009G032600--Sobic006G036400 Sobic003G170300 Sobic003G170300 Sobic006G038200--Sobic003G170300 Sobic004G282700 Sobic004G282700 Sobic006G038200--Sobic004G282700 Sobic002G338400 Sobic002G338400 Sobic006G038200--Sobic002G338400 Sobic010G264300 Sobic010G264300 Sobic006G038200--Sobic010G264300 Sobic008G178800 Sobic008G178800 Sobic006G038200--Sobic008G178800 Sobic009G017500 Sobic009G017500 Sobic006G038200--Sobic009G017500 Sobic003G216500 Sobic003G216500 Sobic006G038200--Sobic003G216500 Sobic001G035600 Sobic001G035600 Sobic006G038200--Sobic001G035600 Sobic006G038200--Sobic006G075000 Sobic008G000100--Sobic004G203900 Sobic003G149000 Sobic003G149000 Sobic008G000100--Sobic003G149000 Sobic005G141000 Sobic005G141000 Sobic008G000100--Sobic005G141000 Sobic004G249400 Sobic004G249400 Sobic008G000100--Sobic004G249400 Sobic008G143600 Sobic008G143600 Sobic008G000100--Sobic008G143600 Sobic005G218201 Sobic005G218201 Sobic008G000100--Sobic005G218201 Sobic004G257700 Sobic004G257700 Sobic008G000100--Sobic004G257700 Sobic009G070700 Sobic009G070700 Sobic008G000100--Sobic009G070700 Sobic002G207900 Sobic002G207900 Sobic008G000100--Sobic002G207900 Sobic007G173000 Sobic007G173000 Sobic002G347400--Sobic007G173000 Sobic001G146000 Sobic001G146000 Sobic002G347400--Sobic001G146000 Sobic008G084100 Sobic008G084100 Sobic002G347400--Sobic008G084100 Sobic003G394100 Sobic003G394100 Sobic002G347400--Sobic003G394100 Sobic010G277000 Sobic010G277000 Sobic002G347400--Sobic010G277000 Sobic002G347400--Sobic004G203900 Sobic002G347400--Sobic001G107200 Sobic003G442300 Sobic003G442300 Sobic002G347400--Sobic003G442300 Sobic001G051300 Sobic001G051300 Sobic002G347400--Sobic001G051300 Sobic004G243400 Sobic004G243400 Sobic003G098600--Sobic004G243400 Sobic003G098600--Sobic004G203900 Sobic001G021500 Sobic001G021500 Sobic003G098600--Sobic001G021500 Sobic003G098600--Sobic009G055900 Sobic003G098600--Sobic004G168700 Sobic003G098600--Sobic001G405000 Sobic003G098600--Sobic003G071400 Sobic007G166600 Sobic007G166600 Sobic003G098600--Sobic007G166600 Sobic001G099100 Sobic001G099100 Sobic003G098600--Sobic001G099100 Sobic004G168700--Sobic010G086800 Sobic004G168700--Sobic009G032600 Sobic004G168700--Sobic009G232200 Sobic008G082400 Sobic008G082400 Sobic004G168700--Sobic008G082400 Sobic009G211800 Sobic009G211800 Sobic004G168700--Sobic009G211800 Sobic004G168700--Sobic002G072200 Sobic004G243800 Sobic004G243800 Sobic004G168700--Sobic004G243800 Sobic004G168700--Sobic009G226900 Sobic004G168700--Sobic003G108000
Octagon: transcription factors


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