Gene annotation
Transcriptome id Sobic.003G170300.1
Synonym Sb03g018290
Functional annotation LYR motif containing protein, putative, expressed
UniProt C5XLB7
Pfam PF13233
Panther DB PTHR12964
NCBI CDD KOG3426; NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit
KEGG Orthology K03950; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12260 : LYR family of Fe/S cluster biogenesis protein
RAP-DB (Rice) LOC_Os07g44650.1 : LYR motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000259
Brachypodium KQK14982
Barley HORVU2Hr1G026060.2 , HORVU2Hr1G026060.3 , HORVU2Hr1G026060.1
Wheat TraesCS2A02G146900 , TraesCS2B02G172200
Populus -


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cDNA sequences
Sobic.003G170300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
2 Sobic.008G150300 Lg106, putative, expressed -
3 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
4 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
5 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
6 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
7 Sobic.002G308300 expressed protein -
8 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
9 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
10 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
11 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
12 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
14 Sobic.006G038200 receptor protein kinase, putative, expressed -
15 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
16 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
17 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
18 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
19 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
20 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2


Gene co-expression network
sample Sobic003G170300 Sobic003G170300 Sobic009G240700 Sobic009G240700 Sobic003G170300--Sobic009G240700 Sobic008G150300 Sobic008G150300 Sobic003G170300--Sobic008G150300 Sobic001G473400 Sobic001G473400 Sobic003G170300--Sobic001G473400 Sobic004G155100 Sobic004G155100 Sobic003G170300--Sobic004G155100 Sobic004G282700 Sobic004G282700 Sobic003G170300--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic003G170300--Sobic002G180300 Sobic002G308300 Sobic002G308300 Sobic003G170300--Sobic002G308300 Sobic001G282500 Sobic001G282500 Sobic003G170300--Sobic001G282500 Sobic010G264300 Sobic010G264300 Sobic003G170300--Sobic010G264300 Sobic009G240700--Sobic003G170300 Sobic009G240700--Sobic004G155100 Sobic003G238500 Sobic003G238500 Sobic009G240700--Sobic003G238500 Sobic009G240700--Sobic001G473400 Sobic002G395000 Sobic002G395000 Sobic009G240700--Sobic002G395000 Sobic002G078300 Sobic002G078300 Sobic009G240700--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic009G240700--Sobic001G286200 Sobic009G240700--Sobic010G264300 Sobic009G240700--Sobic001G282500 Sobic008G150300--Sobic003G170300 Sobic001G281900 Sobic001G281900 Sobic008G150300--Sobic001G281900 Sobic001G338400 Sobic001G338400 Sobic008G150300--Sobic001G338400 Sobic001G458800 Sobic001G458800 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic002G410700 Sobic002G410700 Sobic008G150300--Sobic002G410700 Sobic005G105500 Sobic005G105500 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic006G211800 Sobic006G211800 Sobic008G150300--Sobic006G211800 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic001G473400--Sobic009G240700 Sobic003G388700 Sobic003G388700 Sobic001G473400--Sobic003G388700 Sobic006G020900 Sobic006G020900 Sobic001G473400--Sobic006G020900 Sobic001G473400--Sobic001G282500 Sobic001G473400--Sobic002G395000 Sobic001G473400--Sobic002G308300 Sobic003G135600 Sobic003G135600 Sobic004G155100--Sobic003G135600 Sobic002G309700 Sobic002G309700 Sobic004G155100--Sobic002G309700 Sobic004G155100--Sobic002G395000 Sobic009G224400 Sobic009G224400 Sobic004G155100--Sobic009G224400 Sobic004G260200 Sobic004G260200 Sobic004G155100--Sobic004G260200 Sobic001G073600 Sobic001G073600 Sobic004G155100--Sobic001G073600 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic004G155100--Sobic002G180300 Sobic004G282700--Sobic003G170300 Sobic004G282700--Sobic010G264300 Sobic004G282700--Sobic002G180300 Sobic001G096100 Sobic001G096100 Sobic004G282700--Sobic001G096100 Sobic002G356400 Sobic002G356400 Sobic004G282700--Sobic002G356400 Sobic001G304400 Sobic001G304400 Sobic004G282700--Sobic001G304400 Sobic006G038200 Sobic006G038200 Sobic004G282700--Sobic006G038200 Sobic005G194900 Sobic005G194900 Sobic004G282700--Sobic005G194900 Sobic008G132400 Sobic008G132400 Sobic004G282700--Sobic008G132400 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G180300--Sobic002G356400 Sobic009G179100 Sobic009G179100 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic001G404800 Sobic001G404800 Sobic002G180300--Sobic001G404800 Sobic001G370700 Sobic001G370700 Sobic002G180300--Sobic001G370700 Sobic002G180300--Sobic002G308300 Sobic002G308300--Sobic001G286200 Sobic002G308300--Sobic010G264300 Sobic001G347901 Sobic001G347901 Sobic002G308300--Sobic001G347901 Sobic002G308300--Sobic009G016500 Sobic002G308300--Sobic002G309700 Sobic002G308300--Sobic001G282500 Sobic002G308300--Sobic001G370700 Sobic002G308300--Sobic002G180300 Sobic002G308300--Sobic002G078300 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic001G282500--Sobic004G260200 Sobic001G282500--Sobic002G356400 Sobic001G282500--Sobic002G395000 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic010G264300--Sobic001G286200 Sobic010G264300--Sobic002G078300 Sobic010G264300--Sobic002G308300 Sobic001G519000 Sobic001G519000 Sobic010G264300--Sobic001G519000 Sobic010G264300--Sobic002G356400 Sobic009G212200 Sobic009G212200 Sobic010G264300--Sobic009G212200 Sobic010G264300--Sobic001G370700 Sobic010G264300--Sobic001G304400 Sobic010G264300--Sobic002G180300
Octagon: transcription factors


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