Gene annotation
Transcriptome id Sobic.003G216500.1
Synonym Sb03g027540
Functional annotation vacuolar ATP synthase, putative, expressed
UniProt C5XQY1
Pfam PF00137
Panther DB PTHR10263 PTHR10263:SF10
NCBI CDD KOG0233; Vacuolar H+-ATPase V0 sector, subunit c''
KEGG Orthology K03661; ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT4G32530 : ATPase, F0/V0 complex, subunit C protein
RAP-DB (Rice) LOC_Os01g42430.1 : vacuolar ATP synthase, putative, expressed
MaizeGDB (Corn) Zm00025a038482 , Zm00025a028686
Brachypodium PNT72370
Barley HORVU3Hr1G053400.1 , HORVU3Hr1G053390.1 , HORVU3Hr1G053390.2
Wheat TraesCS3B02G249000 , TraesCS3D02G234100 , TraesCS3A02G218100
Populus -


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cDNA sequences
Sobic.003G216500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
2 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
3 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
4 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
5 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
6 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
7 Sobic.003G279200 ubiquinone oxidoreductase, putative, expressed K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7
8 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
9 Sobic.001G290700 AGAP003819-PA, putative, expressed K09008: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
10 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
11 Sobic.008G150300 Lg106, putative, expressed -
12 Sobic.006G002201 - -
13 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
14 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
15 Sobic.003G103400 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
16 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
17 Sobic.007G161200 expressed protein -
18 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
19 Sobic.006G281200 csAtPR5, putative, expressed -
20 Sobic.006G038200 receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic003G216500 Sobic003G216500 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic002G410700--Sobic003G216500 Sobic006G237200 Sobic006G237200 Sobic002G410700--Sobic006G237200 Sobic009G256000 Sobic009G256000 Sobic002G410700--Sobic009G256000 Sobic008G150300 Sobic008G150300 Sobic002G410700--Sobic008G150300 Sobic002G410700--Sobic001G473400 Sobic002G410700--Sobic006G020900 Sobic002G410700--Sobic009G240700 Sobic007G161200 Sobic007G161200 Sobic002G410700--Sobic007G161200 Sobic002G410700--Sobic003G170300 Sobic004G182500--Sobic003G216500 Sobic003G103400 Sobic003G103400 Sobic004G182500--Sobic003G103400 Sobic004G182500--Sobic002G073800 Sobic008G093200 Sobic008G093200 Sobic004G182500--Sobic008G093200 Sobic010G258500 Sobic010G258500 Sobic004G182500--Sobic010G258500 Sobic001G376700 Sobic001G376700 Sobic004G182500--Sobic001G376700 Sobic006G281200 Sobic006G281200 Sobic004G182500--Sobic006G281200 Sobic003G325500 Sobic003G325500 Sobic004G182500--Sobic003G325500 Sobic001G215500 Sobic001G215500 Sobic004G182500--Sobic001G215500 Sobic009G240700--Sobic003G170300 Sobic004G155100 Sobic004G155100 Sobic009G240700--Sobic004G155100 Sobic003G238500 Sobic003G238500 Sobic009G240700--Sobic003G238500 Sobic009G240700--Sobic001G473400 Sobic002G395000 Sobic002G395000 Sobic009G240700--Sobic002G395000 Sobic002G078300 Sobic002G078300 Sobic009G240700--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic009G240700--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic009G240700--Sobic010G264300 Sobic001G282500 Sobic001G282500 Sobic009G240700--Sobic001G282500 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic001G473400--Sobic009G240700 Sobic003G388700 Sobic003G388700 Sobic001G473400--Sobic003G388700 Sobic001G473400--Sobic006G020900 Sobic001G473400--Sobic001G282500 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300 Sobic003G170300--Sobic009G240700 Sobic003G170300--Sobic008G150300 Sobic003G170300--Sobic001G473400 Sobic003G170300--Sobic004G155100 Sobic004G282700 Sobic004G282700 Sobic003G170300--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic003G170300--Sobic002G180300 Sobic003G170300--Sobic002G308300 Sobic003G170300--Sobic001G282500 Sobic003G170300--Sobic010G264300 Sobic010G018400 Sobic010G018400 Sobic002G073800--Sobic010G018400 Sobic009G212200 Sobic009G212200 Sobic002G073800--Sobic009G212200 Sobic008G127500 Sobic008G127500 Sobic002G073800--Sobic008G127500 Sobic009G062000 Sobic009G062000 Sobic002G073800--Sobic009G062000 Sobic001G095632 Sobic001G095632 Sobic002G073800--Sobic001G095632 Sobic001G304400 Sobic001G304400 Sobic002G073800--Sobic001G304400 Sobic009G176000 Sobic009G176000 Sobic002G073800--Sobic009G176000 Sobic002G356400 Sobic002G356400 Sobic002G073800--Sobic002G356400 Sobic001G034700 Sobic001G034700 Sobic002G073800--Sobic001G034700 Sobic003G279200--Sobic003G216500 Sobic001G116500 Sobic001G116500 Sobic003G279200--Sobic001G116500 Sobic003G279200--Sobic002G410700 Sobic003G279200--Sobic006G237200 Sobic006G178000 Sobic006G178000 Sobic003G279200--Sobic006G178000 Sobic003G190500 Sobic003G190500 Sobic003G279200--Sobic003G190500 Sobic002G396700 Sobic002G396700 Sobic003G279200--Sobic002G396700 Sobic003G279200--Sobic006G020900 Sobic006G276700 Sobic006G276700 Sobic003G279200--Sobic006G276700 Sobic006G020900--Sobic001G473400 Sobic006G020900--Sobic002G410700 Sobic006G020900--Sobic003G388700 Sobic005G105500 Sobic005G105500 Sobic006G020900--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic006G020900--Sobic009G240700 Sobic001G290700--Sobic003G216500 Sobic002G272500 Sobic002G272500 Sobic001G290700--Sobic002G272500 Sobic006G002201 Sobic006G002201 Sobic001G290700--Sobic006G002201 Sobic001G290700--Sobic008G150300 Sobic010G026925 Sobic010G026925 Sobic001G290700--Sobic010G026925 Sobic001G290700--Sobic003G170300 Sobic006G211800 Sobic006G211800 Sobic001G290700--Sobic006G211800 Sobic003G165101 Sobic003G165101 Sobic001G290700--Sobic003G165101 Sobic001G290700--Sobic006G020900
Octagon: transcription factors


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