Gene annotation
Transcriptome id Sobic.007G167800.1
Synonym Sb07g024070
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
dihydroxy-acid dehydratase, putative, expressed
UniProt C5YN64
Pfam PF00920
Panther DB PTHR21000 PTHR21000:SF5
NCBI CDD -
KEGG Orthology K01687; dihydroxy-acid dehydratase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G23940 : dehydratase family
RAP-DB (Rice) LOC_Os08g44530.1 : dihydroxy-acid dehydratase, putative, expressed
MaizeGDB (Corn) Zm00025a005593 , Zm00025a030542
Brachypodium KQJ99382
Barley HORVU7Hr1G059460.9 , HORVU7Hr1G059460.1 , HORVU7Hr1G059460.3 , HORVU7Hr1G059460.4 , HORVU7Hr1G059460.7 , HORVU7Hr1G059460.2 , HORVU7Hr1G059460.5 , HORVU7Hr1G059460.6 , HORVU7Hr1G059460.10
Wheat TraesCS7A02G280700 , TraesCS7D02G279300 , TraesCS7B02G180500 , TraesCS7B02G180500
Populus PNT46171 , PNT46172


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
2 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
3 Sobic.001G507000 expressed protein -
4 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
5 Sobic.002G253900 growth regulator related protein, putative, expressed -
6 Sobic.003G119900 inositol-1-monophosphatase, putative, expressed K18649: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase
7 Sobic.006G127200 kelch repeat protein, putative, expressed -
8 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
10 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
11 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
12 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.008G160600 tesmin/TSO1-like CXC domain containing protein, expressed -
14 Sobic.009G068700 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
15 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
16 Sobic.010G052400 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
17 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
18 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
19 Sobic.006G071628 - -
20 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A


Gene co-expression network
sample Sobic007G167800 Sobic007G167800 Sobic004G050300 Sobic004G050300 Sobic007G167800--Sobic004G050300 Sobic003G028400 Sobic003G028400 Sobic007G167800--Sobic003G028400 Sobic001G507000 Sobic001G507000 Sobic007G167800--Sobic001G507000 Sobic007G072100 Sobic007G072100 Sobic007G167800--Sobic007G072100 Sobic002G253900 Sobic002G253900 Sobic007G167800--Sobic002G253900 Sobic003G119900 Sobic003G119900 Sobic007G167800--Sobic003G119900 Sobic006G127200 Sobic006G127200 Sobic007G167800--Sobic006G127200 Sobic002G126800 Sobic002G126800 Sobic007G167800--Sobic002G126800 Sobic005G068800 Sobic005G068800 Sobic007G167800--Sobic005G068800 Sobic004G050300--Sobic007G167800 Sobic001G429200 Sobic001G429200 Sobic004G050300--Sobic001G429200 Sobic004G050300--Sobic007G072100 Sobic003G103701 Sobic003G103701 Sobic004G050300--Sobic003G103701 Sobic003G113900 Sobic003G113900 Sobic004G050300--Sobic003G113900 Sobic006G200901 Sobic006G200901 Sobic004G050300--Sobic006G200901 Sobic004G050300--Sobic002G253900 Sobic009G068700 Sobic009G068700 Sobic004G050300--Sobic009G068700 Sobic005G030100 Sobic005G030100 Sobic004G050300--Sobic005G030100 Sobic004G129500 Sobic004G129500 Sobic003G028400--Sobic004G129500 Sobic003G331000 Sobic003G331000 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G028400--Sobic001G123600 Sobic007G031300 Sobic007G031300 Sobic003G028400--Sobic007G031300 Sobic002G123600 Sobic002G123600 Sobic003G028400--Sobic002G123600 Sobic001G465500 Sobic001G465500 Sobic003G028400--Sobic001G465500 Sobic007G030600 Sobic007G030600 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic001G507000--Sobic005G068800 Sobic004G321400 Sobic004G321400 Sobic001G507000--Sobic004G321400 Sobic003G183700 Sobic003G183700 Sobic001G507000--Sobic003G183700 Sobic001G146900 Sobic001G146900 Sobic001G507000--Sobic001G146900 Sobic006G120600 Sobic006G120600 Sobic001G507000--Sobic006G120600 Sobic004G156200 Sobic004G156200 Sobic001G507000--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic001G507000--Sobic006G195500 Sobic004G095200 Sobic004G095200 Sobic001G507000--Sobic004G095200 Sobic009G087000 Sobic009G087000 Sobic001G507000--Sobic009G087000 Sobic003G411700 Sobic003G411700 Sobic007G072100--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic007G072100--Sobic003G343200 Sobic007G072100--Sobic002G253900 Sobic003G298900 Sobic003G298900 Sobic007G072100--Sobic003G298900 Sobic004G306100 Sobic004G306100 Sobic007G072100--Sobic004G306100 Sobic001G033300 Sobic001G033300 Sobic007G072100--Sobic001G033300 Sobic002G271400 Sobic002G271400 Sobic007G072100--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic007G072100--Sobic004G014100 Sobic001G425200 Sobic001G425200 Sobic007G072100--Sobic001G425200 Sobic009G148000 Sobic009G148000 Sobic002G253900--Sobic009G148000 Sobic001G123100 Sobic001G123100 Sobic002G253900--Sobic001G123100 Sobic002G253900--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic002G253900--Sobic002G343000 Sobic001G005800 Sobic001G005800 Sobic002G253900--Sobic001G005800 Sobic001G540700 Sobic001G540700 Sobic002G253900--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic002G253900--Sobic006G218900 Sobic002G284100 Sobic002G284100 Sobic002G253900--Sobic002G284100 Sobic002G006100 Sobic002G006100 Sobic002G253900--Sobic002G006100 Sobic003G119900--Sobic004G014100 Sobic008G174500 Sobic008G174500 Sobic003G119900--Sobic008G174500 Sobic003G129300 Sobic003G129300 Sobic003G119900--Sobic003G129300 Sobic003G119900--Sobic007G167800 Sobic010G152000 Sobic010G152000 Sobic003G119900--Sobic010G152000 Sobic003G119900--Sobic006G127200 Sobic008G160600 Sobic008G160600 Sobic003G119900--Sobic008G160600 Sobic003G217500 Sobic003G217500 Sobic003G119900--Sobic003G217500 Sobic010G223500 Sobic010G223500 Sobic003G119900--Sobic010G223500 Sobic006G127200--Sobic004G306100 Sobic006G127200--Sobic002G271400 Sobic010G257500 Sobic010G257500 Sobic006G127200--Sobic010G257500 Sobic006G127200--Sobic002G123600 Sobic003G409600 Sobic003G409600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic009G081800 Sobic009G081800 Sobic006G127200--Sobic009G081800 Sobic010G103500 Sobic010G103500 Sobic006G127200--Sobic010G103500 Sobic001G025900 Sobic001G025900 Sobic006G127200--Sobic001G025900 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G126800--Sobic005G028100 Sobic001G373000 Sobic001G373000 Sobic002G126800--Sobic001G373000 Sobic009G104900 Sobic009G104900 Sobic002G126800--Sobic009G104900 Sobic002G132600 Sobic002G132600 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic005G068800--Sobic001G507000 Sobic005G068800--Sobic004G156200 Sobic005G068800--Sobic004G095200 Sobic005G068800--Sobic006G120600 Sobic009G146250 Sobic009G146250 Sobic005G068800--Sobic009G146250 Sobic005G068800--Sobic006G195500 Sobic005G068800--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic005G068800--Sobic002G021200 Sobic009G052100 Sobic009G052100 Sobic005G068800--Sobic009G052100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.