Gene annotation
Transcriptome id Sobic.008G160600.1,Sobic.008G160600.2
Synonym TSO1, Sb08g020800, ATTSO1
Functional annotation tesmin/TSO1-like CXC domain containing protein, expressed
UniProt A0A1B6PE01 , C5YRH0
Pfam PF03638
Panther DB PTHR12446 PTHR12446:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22780 : Tesmin/TSO1-like CXC domain-containing protein
RAP-DB (Rice) LOC_Os12g41230.2,LOC_Os12g41230.1 : tesmin/TSO1-like CXC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025311 , Zm00025a004626
Brachypodium -
Barley HORVU5Hr1G012950.2 , HORVU5Hr1G012950.3 , HORVU5Hr1G012950.1 , HORVU5Hr1G012950.7 , HORVU5Hr1G012950.4 , HORVU5Hr1G012950.5 , HORVU5Hr1G012950.9
Wheat TraesCS5A02G053800 , TraesCS5D02G065300 , TraesCS5D02G065300 , TraesCS5B02G062400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G160600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
2 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
3 Sobic.010G223500 dnaJ domain containing protein, expressed -
4 Sobic.010G257500 expressed protein -
5 Sobic.001G485500 - -
6 Sobic.004G198300 expressed protein -
7 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
9 Sobic.004G215200 expressed protein -
10 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
11 Sobic.010G038900 expressed protein -
12 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
13 Sobic.001G053350 - -
14 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
15 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
16 Sobic.008G174500 expressed protein -
17 Sobic.006G100266 - -
18 Sobic.003G418400 expressed protein -
19 Sobic.006G272300 pentatricopeptide, putative, expressed -
20 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family


Gene co-expression network
sample Sobic008G160600 Sobic008G160600 Sobic006G184200 Sobic006G184200 Sobic008G160600--Sobic006G184200 Sobic010G009600 Sobic010G009600 Sobic008G160600--Sobic010G009600 Sobic010G223500 Sobic010G223500 Sobic008G160600--Sobic010G223500 Sobic010G257500 Sobic010G257500 Sobic008G160600--Sobic010G257500 Sobic001G485500 Sobic001G485500 Sobic008G160600--Sobic001G485500 Sobic004G198300 Sobic004G198300 Sobic008G160600--Sobic004G198300 Sobic010G018900 Sobic010G018900 Sobic008G160600--Sobic010G018900 Sobic008G087200 Sobic008G087200 Sobic008G160600--Sobic008G087200 Sobic004G215200 Sobic004G215200 Sobic008G160600--Sobic004G215200 Sobic006G184200--Sobic008G160600 Sobic010G038900 Sobic010G038900 Sobic006G184200--Sobic010G038900 Sobic002G354800 Sobic002G354800 Sobic006G184200--Sobic002G354800 Sobic008G174500 Sobic008G174500 Sobic006G184200--Sobic008G174500 Sobic003G042200 Sobic003G042200 Sobic006G184200--Sobic003G042200 Sobic002G230400 Sobic002G230400 Sobic006G184200--Sobic002G230400 Sobic006G184200--Sobic008G087200 Sobic006G184200--Sobic010G009600 Sobic003G379900 Sobic003G379900 Sobic006G184200--Sobic003G379900 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic010G009600--Sobic008G160600 Sobic001G534400 Sobic001G534400 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic006G100266 Sobic006G100266 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic010G009600--Sobic004G215200 Sobic010G009600--Sobic006G184200 Sobic010G223500--Sobic008G160600 Sobic003G062101 Sobic003G062101 Sobic010G223500--Sobic003G062101 Sobic010G223500--Sobic006G184200 Sobic010G223500--Sobic006G100266 Sobic010G223500--Sobic003G042200 Sobic010G223500--Sobic008G174500 Sobic010G223500--Sobic010G009600 Sobic001G194100 Sobic001G194100 Sobic010G223500--Sobic001G194100 Sobic010G223500--Sobic010G038900 Sobic010G257500--Sobic010G009600 Sobic003G343200 Sobic003G343200 Sobic010G257500--Sobic003G343200 Sobic010G257500--Sobic001G534400 Sobic006G127200 Sobic006G127200 Sobic010G257500--Sobic006G127200 Sobic010G013400 Sobic010G013400 Sobic010G257500--Sobic010G013400 Sobic010G257500--Sobic010G018900 Sobic002G271400 Sobic002G271400 Sobic010G257500--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic010G257500--Sobic004G014100 Sobic010G257500--Sobic010G038900 Sobic001G053350 Sobic001G053350 Sobic001G485500--Sobic001G053350 Sobic001G485500--Sobic004G215200 Sobic003G275400 Sobic003G275400 Sobic001G485500--Sobic003G275400 Sobic010G255400 Sobic010G255400 Sobic001G485500--Sobic010G255400 Sobic010G036901 Sobic010G036901 Sobic001G485500--Sobic010G036901 Sobic009G168200 Sobic009G168200 Sobic001G485500--Sobic009G168200 Sobic005G201200 Sobic005G201200 Sobic001G485500--Sobic005G201200 Sobic009G163400 Sobic009G163400 Sobic001G485500--Sobic009G163400 Sobic010G062900 Sobic010G062900 Sobic001G485500--Sobic010G062900 Sobic003G293400 Sobic003G293400 Sobic004G198300--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G198300--Sobic004G026600 Sobic007G086600 Sobic007G086600 Sobic004G198300--Sobic007G086600 Sobic004G198300--Sobic010G255400 Sobic005G067966 Sobic005G067966 Sobic004G198300--Sobic005G067966 Sobic002G308000 Sobic002G308000 Sobic004G198300--Sobic002G308000 Sobic002G313100 Sobic002G313100 Sobic004G198300--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic004G198300--Sobic002G392400 Sobic005G087300 Sobic005G087300 Sobic004G198300--Sobic005G087300 Sobic010G018900--Sobic002G308000 Sobic010G018900--Sobic010G257500 Sobic004G007700 Sobic004G007700 Sobic010G018900--Sobic004G007700 Sobic002G066800 Sobic002G066800 Sobic010G018900--Sobic002G066800 Sobic010G018900--Sobic010G038900 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic006G272300 Sobic006G272300 Sobic010G018900--Sobic006G272300 Sobic008G087200--Sobic002G274700 Sobic008G087200--Sobic006G100266 Sobic008G087200--Sobic010G009600 Sobic008G087200--Sobic001G534400 Sobic008G087200--Sobic010G038900 Sobic008G087200--Sobic006G272300 Sobic008G087200--Sobic006G184200 Sobic008G087200--Sobic010G018900 Sobic008G087200--Sobic003G343200 Sobic004G215200--Sobic001G053350 Sobic004G215200--Sobic010G062900 Sobic006G208200 Sobic006G208200 Sobic004G215200--Sobic006G208200 Sobic004G215200--Sobic001G485500 Sobic001G499500 Sobic001G499500 Sobic004G215200--Sobic001G499500 Sobic004G215200--Sobic009G163400 Sobic002G309100 Sobic002G309100 Sobic004G215200--Sobic002G309100 Sobic004G215200--Sobic007G086600 Sobic010G252100 Sobic010G252100 Sobic004G215200--Sobic010G252100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.