Gene annotation
Transcriptome id Sobic.006G272300.1
Synonym Sb06g033370
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6PP78
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF323
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G29230 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g38310.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS1B02G366700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G100266 - -
2 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
4 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
8 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
9 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
10 Sobic.001G154200 IQ calmodulin-binding motif domain containing protein, expressed -
11 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
12 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G328100 expressed protein -
14 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
15 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
16 Sobic.008G018200 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
17 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
18 Sobic.008G160600 tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
20 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G272300 Sobic006G272300 Sobic006G100266 Sobic006G100266 Sobic006G272300--Sobic006G100266 Sobic008G087200 Sobic008G087200 Sobic006G272300--Sobic008G087200 Sobic001G131900 Sobic001G131900 Sobic006G272300--Sobic001G131900 Sobic001G196800 Sobic001G196800 Sobic006G272300--Sobic001G196800 Sobic002G274700 Sobic002G274700 Sobic006G272300--Sobic002G274700 Sobic010G018900 Sobic010G018900 Sobic006G272300--Sobic010G018900 Sobic010G009600 Sobic010G009600 Sobic006G272300--Sobic010G009600 Sobic003G293400 Sobic003G293400 Sobic006G272300--Sobic003G293400 Sobic001G188000 Sobic001G188000 Sobic006G272300--Sobic001G188000 Sobic003G255700 Sobic003G255700 Sobic006G100266--Sobic003G255700 Sobic003G308300 Sobic003G308300 Sobic006G100266--Sobic003G308300 Sobic001G305900 Sobic001G305900 Sobic006G100266--Sobic001G305900 Sobic006G100266--Sobic002G274700 Sobic003G270100 Sobic003G270100 Sobic006G100266--Sobic003G270100 Sobic006G100266--Sobic008G087200 Sobic002G322400 Sobic002G322400 Sobic006G100266--Sobic002G322400 Sobic009G186700 Sobic009G186700 Sobic006G100266--Sobic009G186700 Sobic006G100266--Sobic010G009600 Sobic008G087200--Sobic002G274700 Sobic008G087200--Sobic006G100266 Sobic008G087200--Sobic010G009600 Sobic001G534400 Sobic001G534400 Sobic008G087200--Sobic001G534400 Sobic010G038900 Sobic010G038900 Sobic008G087200--Sobic010G038900 Sobic008G087200--Sobic006G272300 Sobic006G184200 Sobic006G184200 Sobic008G087200--Sobic006G184200 Sobic008G087200--Sobic010G018900 Sobic003G343200 Sobic003G343200 Sobic008G087200--Sobic003G343200 Sobic001G131900--Sobic003G293400 Sobic003G352900 Sobic003G352900 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G385300 Sobic001G385300 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic002G037600 Sobic002G037600 Sobic001G196800--Sobic002G037600 Sobic001G154200 Sobic001G154200 Sobic001G196800--Sobic001G154200 Sobic001G196800--Sobic006G272300 Sobic001G196800--Sobic010G009600 Sobic002G100600 Sobic002G100600 Sobic001G196800--Sobic002G100600 Sobic006G072400 Sobic006G072400 Sobic001G196800--Sobic006G072400 Sobic010G013400 Sobic010G013400 Sobic001G196800--Sobic010G013400 Sobic006G095300 Sobic006G095300 Sobic001G196800--Sobic006G095300 Sobic010G257500 Sobic010G257500 Sobic001G196800--Sobic010G257500 Sobic010G051800 Sobic010G051800 Sobic002G274700--Sobic010G051800 Sobic002G274700--Sobic002G322400 Sobic002G304500 Sobic002G304500 Sobic002G274700--Sobic002G304500 Sobic002G274700--Sobic008G087200 Sobic002G274700--Sobic003G255700 Sobic002G274700--Sobic001G131900 Sobic002G274700--Sobic010G009600 Sobic002G274700--Sobic003G293400 Sobic002G274700--Sobic006G100266 Sobic002G308000 Sobic002G308000 Sobic010G018900--Sobic002G308000 Sobic010G018900--Sobic010G257500 Sobic004G007700 Sobic004G007700 Sobic010G018900--Sobic004G007700 Sobic002G066800 Sobic002G066800 Sobic010G018900--Sobic002G066800 Sobic010G018900--Sobic010G038900 Sobic002G271400 Sobic002G271400 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic010G018900--Sobic006G272300 Sobic010G009600--Sobic010G257500 Sobic010G009600--Sobic002G274700 Sobic008G160600 Sobic008G160600 Sobic010G009600--Sobic008G160600 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic003G042200 Sobic003G042200 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic010G009600--Sobic006G184200 Sobic003G293400--Sobic001G131900 Sobic003G293400--Sobic003G352900 Sobic004G198300 Sobic004G198300 Sobic003G293400--Sobic004G198300 Sobic003G293400--Sobic001G076600 Sobic003G293400--Sobic002G420100 Sobic003G293400--Sobic004G038400 Sobic004G026600 Sobic004G026600 Sobic003G293400--Sobic004G026600 Sobic003G293400--Sobic004G298600 Sobic003G293400--Sobic007G144100 Sobic010G069500 Sobic010G069500 Sobic001G188000--Sobic010G069500 Sobic002G414800 Sobic002G414800 Sobic001G188000--Sobic002G414800 Sobic004G328100 Sobic004G328100 Sobic001G188000--Sobic004G328100 Sobic002G348400 Sobic002G348400 Sobic001G188000--Sobic002G348400 Sobic001G280500 Sobic001G280500 Sobic001G188000--Sobic001G280500 Sobic001G309200 Sobic001G309200 Sobic001G188000--Sobic001G309200 Sobic002G397900 Sobic002G397900 Sobic001G188000--Sobic002G397900 Sobic001G188000--Sobic001G131900 Sobic001G188000--Sobic002G304500
Octagon: transcription factors


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