Gene annotation
Transcriptome id Sobic.003G255700.1,Sobic.003G255700.2
Synonym Sb03g031060
Functional annotation ubiquitin-conjugating enzyme domain containing protein, expressed
UniProt A0A1B6Q5C3 , A0A1B6Q5B0
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF100
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53025 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os05g48380.1 : ubiquitin-conjugating enzyme domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G100266 - -
2 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
3 Sobic.009G186700 TraB family protein, putative, expressed -
4 Sobic.002G066700 OsFBL33 - F-box domain and LRR containing protein, expressed -
5 Sobic.001G305900 GTP binding protein, putative, expressed -
6 Sobic.008G013200 expressed protein -
7 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
8 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -
9 Sobic.005G201200 - -
10 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
11 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
12 Sobic.004G328100 expressed protein -
13 Sobic.009G056900 acetyltransferase, GNAT family protein, expressed -
14 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.003G270100 dehydrin family protein, expressed -
16 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
17 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
18 Sobic.002G158300 ankyrin, putative, expressed -
19 Sobic.005G206800 expressed protein -
20 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3


Gene co-expression network
sample Sobic003G255700 Sobic003G255700 Sobic006G100266 Sobic006G100266 Sobic003G255700--Sobic006G100266 Sobic003G308300 Sobic003G308300 Sobic003G255700--Sobic003G308300 Sobic009G186700 Sobic009G186700 Sobic003G255700--Sobic009G186700 Sobic002G066700 Sobic002G066700 Sobic003G255700--Sobic002G066700 Sobic001G305900 Sobic001G305900 Sobic003G255700--Sobic001G305900 Sobic008G013200 Sobic008G013200 Sobic003G255700--Sobic008G013200 Sobic002G016000 Sobic002G016000 Sobic003G255700--Sobic002G016000 Sobic001G050500 Sobic001G050500 Sobic003G255700--Sobic001G050500 Sobic005G201200 Sobic005G201200 Sobic003G255700--Sobic005G201200 Sobic006G100266--Sobic003G255700 Sobic006G100266--Sobic003G308300 Sobic006G100266--Sobic001G305900 Sobic002G274700 Sobic002G274700 Sobic006G100266--Sobic002G274700 Sobic003G270100 Sobic003G270100 Sobic006G100266--Sobic003G270100 Sobic008G087200 Sobic008G087200 Sobic006G100266--Sobic008G087200 Sobic002G322400 Sobic002G322400 Sobic006G100266--Sobic002G322400 Sobic006G100266--Sobic009G186700 Sobic010G009600 Sobic010G009600 Sobic006G100266--Sobic010G009600 Sobic003G308300--Sobic003G255700 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic007G148400 Sobic007G148400 Sobic003G308300--Sobic007G148400 Sobic007G218600 Sobic007G218600 Sobic003G308300--Sobic007G218600 Sobic003G308300--Sobic001G305900 Sobic004G328100 Sobic004G328100 Sobic003G308300--Sobic004G328100 Sobic003G308300--Sobic006G100266 Sobic003G308300--Sobic003G270100 Sobic009G186700--Sobic007G218600 Sobic009G186700--Sobic003G255700 Sobic009G186700--Sobic001G305900 Sobic009G186700--Sobic003G308300 Sobic009G186700--Sobic001G050500 Sobic001G114200 Sobic001G114200 Sobic009G186700--Sobic001G114200 Sobic001G280500 Sobic001G280500 Sobic009G186700--Sobic001G280500 Sobic009G186700--Sobic008G013200 Sobic009G186700--Sobic007G148400 Sobic009G056900 Sobic009G056900 Sobic002G066700--Sobic009G056900 Sobic002G147400 Sobic002G147400 Sobic002G066700--Sobic002G147400 Sobic001G392700 Sobic001G392700 Sobic002G066700--Sobic001G392700 Sobic002G066700--Sobic005G201200 Sobic007G086701 Sobic007G086701 Sobic002G066700--Sobic007G086701 Sobic006G038700 Sobic006G038700 Sobic002G066700--Sobic006G038700 Sobic001G264600 Sobic001G264600 Sobic002G066700--Sobic001G264600 Sobic005G206800 Sobic005G206800 Sobic002G066700--Sobic005G206800 Sobic002G066700--Sobic002G016000 Sobic001G305900--Sobic007G218600 Sobic001G305900--Sobic001G050500 Sobic005G063200 Sobic005G063200 Sobic001G305900--Sobic005G063200 Sobic001G305900--Sobic009G186700 Sobic001G305900--Sobic003G255700 Sobic002G348400 Sobic002G348400 Sobic001G305900--Sobic002G348400 Sobic001G305900--Sobic001G280500 Sobic002G158300 Sobic002G158300 Sobic001G305900--Sobic002G158300 Sobic001G305900--Sobic003G308300 Sobic008G013200--Sobic003G308300 Sobic008G013200--Sobic002G016000 Sobic008G013200--Sobic003G255700 Sobic008G013200--Sobic005G201200 Sobic008G013200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic008G013200--Sobic002G304500 Sobic008G013200--Sobic002G158300 Sobic008G013200--Sobic004G328100 Sobic008G013200--Sobic006G038700 Sobic002G016000--Sobic005G201200 Sobic002G016000--Sobic006G038700 Sobic008G041300 Sobic008G041300 Sobic002G016000--Sobic008G041300 Sobic010G255400 Sobic010G255400 Sobic002G016000--Sobic010G255400 Sobic008G007800 Sobic008G007800 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic001G117701 Sobic001G117701 Sobic002G016000--Sobic001G117701 Sobic004G064800 Sobic004G064800 Sobic002G016000--Sobic004G064800 Sobic009G006700 Sobic009G006700 Sobic002G016000--Sobic009G006700 Sobic001G050500--Sobic001G305900 Sobic001G050500--Sobic003G255700 Sobic001G050500--Sobic009G186700 Sobic001G050500--Sobic007G218600 Sobic001G050500--Sobic003G270100 Sobic001G050500--Sobic007G148400 Sobic001G050500--Sobic003G308300 Sobic010G160300 Sobic010G160300 Sobic001G050500--Sobic010G160300 Sobic001G050500--Sobic006G100266 Sobic005G201200--Sobic002G016000 Sobic005G201200--Sobic008G007800 Sobic005G201200--Sobic006G038700 Sobic005G201200--Sobic004G064800 Sobic005G201200--Sobic009G006700 Sobic005G201200--Sobic010G255400 Sobic005G201200--Sobic002G066700 Sobic005G201200--Sobic002G304500 Sobic005G201200--Sobic002G147400
Octagon: transcription factors


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