Gene annotation
Transcriptome id Sobic.010G051800.1
Synonym Sb10g004500, SPT
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1W0VRK2
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF92
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36930 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g06900.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022522 , Zm00025a049914
Brachypodium KQK01240 , KQK01241 , PNT69395
Barley HORVU7Hr1G026560.20 , HORVU7Hr1G026560.8 , HORVU7Hr1G026560.6 , HORVU7Hr1G026560.7 , HORVU7Hr1G026560.9 , HORVU7Hr1G026560.2 , HORVU7Hr1G026560.3 , HORVU6Hr1G088020.10 , HORVU6Hr1G088020.11 , HORVU6Hr1G088020.12 , HORVU6Hr1G088020.13 , HORVU6Hr1G088020.8 , HORVU6Hr1G088020.9 , HORVU6Hr1G088020.2 , HORVU6Hr1G088020.3 , HORVU6Hr1G088020.1 , HORVU6Hr1G088020.6 , HORVU6Hr1G088020.7 , HORVU6Hr1G088020.4 , HORVU6Hr1G088020.5 , HORVU7Hr1G026560.24 , HORVU7Hr1G026560.27 , HORVU7Hr1G026560.23 , HORVU7Hr1G026560.10 , HORVU7Hr1G026560.11 , HORVU7Hr1G026560.12 , HORVU7Hr1G026560.13 , HORVU7Hr1G026560.14 , HORVU7Hr1G026560.15 , HORVU7Hr1G026560.16 , HORVU7Hr1G026560.17 , HORVU7Hr1G026560.25 , HORVU7Hr1G026560.26
Wheat TraesCS7B02G026300 , TraesCS4B02G061800 , TraesCS6A02G190600 , TraesCS6A02G373500 , TraesCS6A02G373500 , TraesCS7A02G126900 , TraesCS7D02G124700 , TraesCS3A02G357000 , TraesCS6D02G357700 , TraesCS6D02G357700 , TraesCS6B02G411300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G051800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
2 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
3 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
4 Sobic.010G143633 - -
5 Sobic.008G105600 - -
6 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.001G075201 - -
8 Sobic.004G027200 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
9 Sobic.007G171700 miro, putative, expressed K07953: GTP-binding protein SAR1
10 Sobic.004G328100 expressed protein -
11 Sobic.009G056900 acetyltransferase, GNAT family protein, expressed -
12 Sobic.003G001901 - -
13 Sobic.006G038700 - -
14 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
15 Sobic.001G392700 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
16 Sobic.005G173700 - -
17 Sobic.001G117701 - -
18 Sobic.003G167200 - -
19 Sobic.005G201200 - -
20 Sobic.002G006500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic010G051800 Sobic010G051800 Sobic008G041300 Sobic008G041300 Sobic010G051800--Sobic008G041300 Sobic002G016000 Sobic002G016000 Sobic010G051800--Sobic002G016000 Sobic002G274700 Sobic002G274700 Sobic010G051800--Sobic002G274700 Sobic010G143633 Sobic010G143633 Sobic010G051800--Sobic010G143633 Sobic008G105600 Sobic008G105600 Sobic010G051800--Sobic008G105600 Sobic003G255700 Sobic003G255700 Sobic010G051800--Sobic003G255700 Sobic001G075201 Sobic001G075201 Sobic010G051800--Sobic001G075201 Sobic004G027200 Sobic004G027200 Sobic010G051800--Sobic004G027200 Sobic007G171700 Sobic007G171700 Sobic010G051800--Sobic007G171700 Sobic008G041300--Sobic002G016000 Sobic005G201200 Sobic005G201200 Sobic008G041300--Sobic005G201200 Sobic010G255400 Sobic010G255400 Sobic008G041300--Sobic010G255400 Sobic008G007800 Sobic008G007800 Sobic008G041300--Sobic008G007800 Sobic006G254400 Sobic006G254400 Sobic008G041300--Sobic006G254400 Sobic001G117701 Sobic001G117701 Sobic008G041300--Sobic001G117701 Sobic008G041300--Sobic001G075201 Sobic010G038000 Sobic010G038000 Sobic008G041300--Sobic010G038000 Sobic009G002100 Sobic009G002100 Sobic008G041300--Sobic009G002100 Sobic002G016000--Sobic005G201200 Sobic006G038700 Sobic006G038700 Sobic002G016000--Sobic006G038700 Sobic002G016000--Sobic008G041300 Sobic002G016000--Sobic010G255400 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic002G016000--Sobic001G117701 Sobic004G064800 Sobic004G064800 Sobic002G016000--Sobic004G064800 Sobic009G006700 Sobic009G006700 Sobic002G016000--Sobic009G006700 Sobic002G274700--Sobic010G051800 Sobic002G322400 Sobic002G322400 Sobic002G274700--Sobic002G322400 Sobic002G304500 Sobic002G304500 Sobic002G274700--Sobic002G304500 Sobic008G087200 Sobic008G087200 Sobic002G274700--Sobic008G087200 Sobic002G274700--Sobic003G255700 Sobic001G131900 Sobic001G131900 Sobic002G274700--Sobic001G131900 Sobic010G009600 Sobic010G009600 Sobic002G274700--Sobic010G009600 Sobic003G293400 Sobic003G293400 Sobic002G274700--Sobic003G293400 Sobic006G100266 Sobic006G100266 Sobic002G274700--Sobic006G100266 Sobic010G143633--Sobic008G105600 Sobic005G048950 Sobic005G048950 Sobic010G143633--Sobic005G048950 Sobic010G049700 Sobic010G049700 Sobic010G143633--Sobic010G049700 Sobic004G116050 Sobic004G116050 Sobic010G143633--Sobic004G116050 Sobic010G143633--Sobic006G038700 Sobic010G143633--Sobic001G117701 Sobic005G144500 Sobic005G144500 Sobic010G143633--Sobic005G144500 Sobic010G143633--Sobic007G171700 Sobic010G143633--Sobic009G006700 Sobic008G105600--Sobic010G143633 Sobic008G105600--Sobic005G048950 Sobic008G105600--Sobic006G038700 Sobic003G167200 Sobic003G167200 Sobic008G105600--Sobic003G167200 Sobic008G105600--Sobic010G049700 Sobic008G105600--Sobic004G116050 Sobic008G105600--Sobic001G117701 Sobic001G313150 Sobic001G313150 Sobic008G105600--Sobic001G313150 Sobic008G007900 Sobic008G007900 Sobic008G105600--Sobic008G007900 Sobic003G255700--Sobic006G100266 Sobic003G308300 Sobic003G308300 Sobic003G255700--Sobic003G308300 Sobic009G186700 Sobic009G186700 Sobic003G255700--Sobic009G186700 Sobic002G066700 Sobic002G066700 Sobic003G255700--Sobic002G066700 Sobic001G305900 Sobic001G305900 Sobic003G255700--Sobic001G305900 Sobic008G013200 Sobic008G013200 Sobic003G255700--Sobic008G013200 Sobic003G255700--Sobic002G016000 Sobic001G050500 Sobic001G050500 Sobic003G255700--Sobic001G050500 Sobic003G255700--Sobic005G201200 Sobic009G119100 Sobic009G119100 Sobic001G075201--Sobic009G119100 Sobic001G392700 Sobic001G392700 Sobic001G075201--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic001G075201--Sobic009G056900 Sobic002G147400 Sobic002G147400 Sobic001G075201--Sobic002G147400 Sobic001G075200 Sobic001G075200 Sobic001G075201--Sobic001G075200 Sobic001G075201--Sobic005G201200 Sobic008G154600 Sobic008G154600 Sobic001G075201--Sobic008G154600 Sobic002G014032 Sobic002G014032 Sobic001G075201--Sobic002G014032 Sobic001G075201--Sobic006G038700 Sobic004G027200--Sobic009G056900 Sobic004G027200--Sobic008G105600 Sobic004G027200--Sobic010G051800 Sobic004G027200--Sobic001G075201 Sobic004G027200--Sobic002G066700 Sobic004G027200--Sobic003G167200 Sobic004G027200--Sobic001G392700 Sobic004G027200--Sobic010G143633 Sobic004G027200--Sobic003G255700 Sobic003G001901 Sobic003G001901 Sobic007G171700--Sobic003G001901 Sobic007G171700--Sobic010G049700 Sobic005G173700 Sobic005G173700 Sobic007G171700--Sobic005G173700 Sobic003G218000 Sobic003G218000 Sobic007G171700--Sobic003G218000 Sobic007G171700--Sobic006G254400 Sobic002G080450 Sobic002G080450 Sobic007G171700--Sobic002G080450 Sobic007G171700--Sobic005G144500 Sobic002G099700 Sobic002G099700 Sobic007G171700--Sobic002G099700 Sobic007G171700--Sobic010G143633
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.