Gene annotation
Transcriptome id Sobic.009G186700.2
Synonym Sb09g024600
Functional annotation TraB family protein, putative, expressed
UniProt A0A1Z5R399
Pfam PF01963
Panther DB PTHR21530 PTHR21530:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05270 : TraB family protein
RAP-DB (Rice) LOC_Os05g42010.1 : TraB family protein, putative, expressed
MaizeGDB (Corn) Zm00025a044122
Brachypodium PNT70976
Barley HORVU1Hr1G066460.11 , HORVU1Hr1G066460.12 , HORVU1Hr1G066460.7 , HORVU1Hr1G066460.1 , HORVU1Hr1G066460.3 , HORVU1Hr1G066460.2 , HORVU1Hr1G066460.9 , HORVU1Hr1G066460.8
Wheat TraesCS1D02G318900 , TraesCS1A02G319100 , TraesCS1B02G331400 , TraesCS1B02G331400
Populus -


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cDNA sequences
Sobic.009G186700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
2 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
3 Sobic.001G305900 GTP binding protein, putative, expressed -
4 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
5 Sobic.001G050500 galactosyltransferase family protein, putative, expressed -
6 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
7 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
8 Sobic.008G013200 expressed protein -
9 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
10 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
11 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
12 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
13 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
14 Sobic.006G100266 - -
15 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
16 Sobic.002G158300 ankyrin, putative, expressed -
17 Sobic.006G210700 potassium transporter, putative, expressed -
18 Sobic.005G201200 - -
19 Sobic.005G063200 expressed protein -
20 Sobic.001G497600 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G186700 Sobic009G186700 Sobic007G218600 Sobic007G218600 Sobic009G186700--Sobic007G218600 Sobic003G255700 Sobic003G255700 Sobic009G186700--Sobic003G255700 Sobic001G305900 Sobic001G305900 Sobic009G186700--Sobic001G305900 Sobic003G308300 Sobic003G308300 Sobic009G186700--Sobic003G308300 Sobic001G050500 Sobic001G050500 Sobic009G186700--Sobic001G050500 Sobic001G114200 Sobic001G114200 Sobic009G186700--Sobic001G114200 Sobic001G280500 Sobic001G280500 Sobic009G186700--Sobic001G280500 Sobic008G013200 Sobic008G013200 Sobic009G186700--Sobic008G013200 Sobic007G148400 Sobic007G148400 Sobic009G186700--Sobic007G148400 Sobic007G218600--Sobic009G186700 Sobic007G218600--Sobic001G305900 Sobic007G218600--Sobic007G148400 Sobic007G218600--Sobic003G255700 Sobic007G218600--Sobic001G280500 Sobic007G218600--Sobic003G308300 Sobic007G218600--Sobic001G114200 Sobic010G181600 Sobic010G181600 Sobic007G218600--Sobic010G181600 Sobic010G160300 Sobic010G160300 Sobic007G218600--Sobic010G160300 Sobic006G100266 Sobic006G100266 Sobic003G255700--Sobic006G100266 Sobic003G255700--Sobic003G308300 Sobic003G255700--Sobic009G186700 Sobic002G066700 Sobic002G066700 Sobic003G255700--Sobic002G066700 Sobic003G255700--Sobic001G305900 Sobic003G255700--Sobic008G013200 Sobic002G016000 Sobic002G016000 Sobic003G255700--Sobic002G016000 Sobic003G255700--Sobic001G050500 Sobic005G201200 Sobic005G201200 Sobic003G255700--Sobic005G201200 Sobic001G305900--Sobic007G218600 Sobic001G305900--Sobic001G050500 Sobic005G063200 Sobic005G063200 Sobic001G305900--Sobic005G063200 Sobic001G305900--Sobic009G186700 Sobic001G305900--Sobic003G255700 Sobic002G348400 Sobic002G348400 Sobic001G305900--Sobic002G348400 Sobic001G305900--Sobic001G280500 Sobic002G158300 Sobic002G158300 Sobic001G305900--Sobic002G158300 Sobic001G305900--Sobic003G308300 Sobic003G308300--Sobic003G255700 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic003G308300--Sobic007G148400 Sobic003G308300--Sobic007G218600 Sobic003G308300--Sobic001G305900 Sobic004G328100 Sobic004G328100 Sobic003G308300--Sobic004G328100 Sobic003G308300--Sobic006G100266 Sobic003G270100 Sobic003G270100 Sobic003G308300--Sobic003G270100 Sobic001G050500--Sobic001G305900 Sobic001G050500--Sobic003G255700 Sobic001G050500--Sobic009G186700 Sobic001G050500--Sobic007G218600 Sobic001G050500--Sobic003G270100 Sobic001G050500--Sobic007G148400 Sobic001G050500--Sobic003G308300 Sobic001G050500--Sobic010G160300 Sobic001G050500--Sobic006G100266 Sobic004G350700 Sobic004G350700 Sobic001G114200--Sobic004G350700 Sobic006G060000 Sobic006G060000 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic003G117800 Sobic003G117800 Sobic001G114200--Sobic003G117800 Sobic003G394500 Sobic003G394500 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic001G114200--Sobic007G218600 Sobic002G414800 Sobic002G414800 Sobic001G280500--Sobic002G414800 Sobic001G149000 Sobic001G149000 Sobic001G280500--Sobic001G149000 Sobic001G280500--Sobic005G063200 Sobic001G384200 Sobic001G384200 Sobic001G280500--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic006G265800 Sobic006G265800 Sobic001G280500--Sobic006G265800 Sobic008G013200--Sobic003G308300 Sobic008G013200--Sobic002G016000 Sobic008G013200--Sobic003G255700 Sobic008G013200--Sobic005G201200 Sobic008G013200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic008G013200--Sobic002G304500 Sobic008G013200--Sobic002G158300 Sobic008G013200--Sobic004G328100 Sobic006G038700 Sobic006G038700 Sobic008G013200--Sobic006G038700 Sobic007G148400--Sobic007G218600 Sobic007G148400--Sobic003G308300 Sobic006G222500 Sobic006G222500 Sobic007G148400--Sobic006G222500 Sobic007G148400--Sobic009G186700 Sobic007G148400--Sobic001G050500 Sobic007G146600 Sobic007G146600 Sobic007G148400--Sobic007G146600 Sobic007G148400--Sobic003G255700 Sobic007G148400--Sobic001G305900 Sobic002G276800 Sobic002G276800 Sobic007G148400--Sobic002G276800
Octagon: transcription factors


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