Gene annotation
Transcriptome id Sobic.010G255400.8,Sobic.010G255400.6,Sobic.010G255400.1,Sobic.010G255400.2,Sobic.010G255400.7,Sobic.010G255400.4,Sobic.010G255400.3,Sobic.010G255400.5
Synonym ATHAC1, ATHPCAT2, PCAT2, HAC1, Sb10g029285
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
histone acetyltransferase HAC1, putative, expressed
UniProt A0A194YLF6 , A0A1W0VUS1 , A0A1W0VUV6 , A0A194YLE0 , A0A1W0VUT2 , A0A1W0VUU5 , A0A194YLH3 , A0A194YMI0
Pfam PF02135 PF08214
Panther DB PTHR13808
NCBI CDD KOG1778; CREB binding protein/P300 and related TAZ Zn-finger proteins
KEGG Orthology K04498; EP300, CREBBP, E1A/CREB-binding protein
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0004402histone acetyltransferase activity GO:0003712transcription coregulator activity GO:0016573histone acetylation


Orthologs (automatic annotation)
TAIR AT1G79000 : histone acetyltransferase of the CBP family 1
RAP-DB (Rice) LOC_Os02g04490.1 : histone acetyltransferase HAC1, putative, expressed
MaizeGDB (Corn) Zm00025a035027
Brachypodium KQK17450
Barley HORVU7Hr1G096240.8 , HORVU7Hr1G096240.9 , HORVU7Hr1G096240.4 , HORVU7Hr1G096240.5 , HORVU7Hr1G096240.6 , HORVU7Hr1G096240.7 , HORVU7Hr1G096240.11
Wheat TraesCS6D02G317200 , TraesCS6B02G367300 , TraesCS7D02G407600 , TraesCS7D02G407600 , TraesCS7A02G414500 , TraesCS7A02G414500 , TraesCS7B02G314400 , TraesCS7B02G314400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G007800 - -
2 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
3 Sobic.005G201200 - -
4 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
5 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
6 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
7 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
8 Sobic.002G158300 ankyrin, putative, expressed -
9 Sobic.006G199500 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
10 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.009G048700 expressed protein -
12 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.002G243400 transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
14 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
15 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
16 Sobic.008G007700 expressed protein -
17 Sobic.003G211800 expressed protein -
18 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
19 Sobic.002G015700 OsFBD13 - F-box and FBD domain containing protein, expressed -
20 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic010G255400 Sobic010G255400 Sobic008G007800 Sobic008G007800 Sobic010G255400--Sobic008G007800 Sobic004G064800 Sobic004G064800 Sobic010G255400--Sobic004G064800 Sobic005G201200 Sobic005G201200 Sobic010G255400--Sobic005G201200 Sobic002G016000 Sobic002G016000 Sobic010G255400--Sobic002G016000 Sobic008G041300 Sobic008G041300 Sobic010G255400--Sobic008G041300 Sobic002G304500 Sobic002G304500 Sobic010G255400--Sobic002G304500 Sobic001G076600 Sobic001G076600 Sobic010G255400--Sobic001G076600 Sobic002G158300 Sobic002G158300 Sobic010G255400--Sobic002G158300 Sobic006G199500 Sobic006G199500 Sobic010G255400--Sobic006G199500 Sobic008G007800--Sobic004G064800 Sobic008G007800--Sobic005G201200 Sobic009G048700 Sobic009G048700 Sobic008G007800--Sobic009G048700 Sobic008G007800--Sobic006G199500 Sobic009G006700 Sobic009G006700 Sobic008G007800--Sobic009G006700 Sobic009G145000 Sobic009G145000 Sobic008G007800--Sobic009G145000 Sobic008G007800--Sobic010G255400 Sobic002G243400 Sobic002G243400 Sobic008G007800--Sobic002G243400 Sobic009G008000 Sobic009G008000 Sobic008G007800--Sobic009G008000 Sobic004G064800--Sobic008G007800 Sobic004G064800--Sobic002G304500 Sobic004G064800--Sobic005G201200 Sobic004G064800--Sobic010G255400 Sobic004G064800--Sobic006G199500 Sobic004G064800--Sobic009G048700 Sobic008G007700 Sobic008G007700 Sobic004G064800--Sobic008G007700 Sobic004G064800--Sobic002G016000 Sobic004G064800--Sobic009G006700 Sobic005G201200--Sobic002G016000 Sobic005G201200--Sobic008G007800 Sobic006G038700 Sobic006G038700 Sobic005G201200--Sobic006G038700 Sobic005G201200--Sobic004G064800 Sobic005G201200--Sobic009G006700 Sobic005G201200--Sobic010G255400 Sobic002G066700 Sobic002G066700 Sobic005G201200--Sobic002G066700 Sobic005G201200--Sobic002G304500 Sobic002G147400 Sobic002G147400 Sobic005G201200--Sobic002G147400 Sobic002G016000--Sobic005G201200 Sobic002G016000--Sobic006G038700 Sobic002G016000--Sobic008G041300 Sobic002G016000--Sobic010G255400 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic001G117701 Sobic001G117701 Sobic002G016000--Sobic001G117701 Sobic002G016000--Sobic004G064800 Sobic002G016000--Sobic009G006700 Sobic008G041300--Sobic002G016000 Sobic008G041300--Sobic005G201200 Sobic008G041300--Sobic010G255400 Sobic008G041300--Sobic008G007800 Sobic006G254400 Sobic006G254400 Sobic008G041300--Sobic006G254400 Sobic008G041300--Sobic001G117701 Sobic001G075201 Sobic001G075201 Sobic008G041300--Sobic001G075201 Sobic010G038000 Sobic010G038000 Sobic008G041300--Sobic010G038000 Sobic009G002100 Sobic009G002100 Sobic008G041300--Sobic009G002100 Sobic002G304500--Sobic004G064800 Sobic002G304500--Sobic005G201200 Sobic002G304500--Sobic008G007800 Sobic002G304500--Sobic010G255400 Sobic002G304500--Sobic002G016000 Sobic002G304500--Sobic006G199500 Sobic004G328100 Sobic004G328100 Sobic002G304500--Sobic004G328100 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400 Sobic003G352900 Sobic003G352900 Sobic001G076600--Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic001G076600--Sobic004G038400 Sobic002G299500 Sobic002G299500 Sobic001G076600--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic001G076600--Sobic004G045632 Sobic003G258100 Sobic003G258100 Sobic001G076600--Sobic003G258100 Sobic005G173700 Sobic005G173700 Sobic001G076600--Sobic005G173700 Sobic003G376900 Sobic003G376900 Sobic001G076600--Sobic003G376900 Sobic002G158300--Sobic002G016000 Sobic002G158300--Sobic010G255400 Sobic002G015700 Sobic002G015700 Sobic002G158300--Sobic002G015700 Sobic002G158300--Sobic002G304500 Sobic002G158300--Sobic008G041300 Sobic002G158300--Sobic005G201200 Sobic003G211800 Sobic003G211800 Sobic002G158300--Sobic003G211800 Sobic002G158300--Sobic004G064800 Sobic006G013600 Sobic006G013600 Sobic002G158300--Sobic006G013600 Sobic006G199500--Sobic009G048700 Sobic006G199500--Sobic009G008000 Sobic002G097200 Sobic002G097200 Sobic006G199500--Sobic002G097200 Sobic001G417700 Sobic001G417700 Sobic006G199500--Sobic001G417700 Sobic006G199500--Sobic009G145000 Sobic006G199500--Sobic002G243400 Sobic004G020200 Sobic004G020200 Sobic006G199500--Sobic004G020200 Sobic001G136000 Sobic001G136000 Sobic006G199500--Sobic001G136000 Sobic008G155700 Sobic008G155700 Sobic006G199500--Sobic008G155700
Octagon: transcription factors


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