Gene annotation
Transcriptome id Sobic.003G042200.4,Sobic.003G042200.3,Sobic.003G042200.2
Synonym Sb03g003730
Functional annotation uncharacterized protein At4g06744 precursor, putative, expressed
UniProt C5XMN8
Pfam PF13855
Panther DB PTHR32093 PTHR32093:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G13340 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os01g08470.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a016581 , Zm00025a037054 , Zm00025a035770 , Zm00025a028597 , Zm00025a043105 , Zm00025a023166 , Zm00025a018931 , Zm00025a041768 , Zm00025a024511 , Zm00025a045149
Brachypodium PNT72312 , KQK07207 , KQK03023 , KQK04276 , KQJ93239 , KQK12721
Barley HORVU6Hr1G019290.6 , HORVU6Hr1G019290.5 , HORVU6Hr1G019290.4 , HORVU6Hr1G019290.3 , HORVU6Hr1G019290.2 , HORVU6Hr1G019290.1 , HORVU7Hr1G096310.2 , HORVU7Hr1G096310.3 , HORVU7Hr1G096310.1 , HORVU3Hr1G021700.2 , HORVU3Hr1G021700.1 , HORVU3Hr1G051610.2 , HORVU3Hr1G051610.3 , HORVU3Hr1G051610.1 , HORVU3Hr1G051610.4 , HORVU1Hr1G026650.2 , HORVU1Hr1G026650.3 , HORVU1Hr1G026650.1 , HORVU1Hr1G026650.6 , HORVU1Hr1G026650.4 , HORVU1Hr1G026650.5
Wheat TraesCS5A02G436000 , TraesCS3D02G119800 , TraesCS5D02G443700 , TraesCS5B02G439200 , TraesCS6A02G108000
Populus -


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cDNA sequences
Sobic.003G042200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G174500 expressed protein -
2 Sobic.001G194100 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
3 Sobic.003G062101 - -
4 Sobic.009G156200 starch binding domain containing protein, putative, expressed -
5 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
6 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
7 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
8 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
9 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
10 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
11 Sobic.001G485500 - -
12 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G354800 zinc finger family protein, putative, expressed -
14 Sobic.010G223500 dnaJ domain containing protein, expressed -
15 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
16 Sobic.004G340566 - -
17 Sobic.006G100266 - -
18 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
19 Sobic.002G099866 - -
20 Sobic.010G257500 expressed protein -


Gene co-expression network
sample Sobic003G042200 Sobic003G042200 Sobic008G174500 Sobic008G174500 Sobic003G042200--Sobic008G174500 Sobic001G194100 Sobic001G194100 Sobic003G042200--Sobic001G194100 Sobic003G062101 Sobic003G062101 Sobic003G042200--Sobic003G062101 Sobic009G156200 Sobic009G156200 Sobic003G042200--Sobic009G156200 Sobic006G184200 Sobic006G184200 Sobic003G042200--Sobic006G184200 Sobic003G379900 Sobic003G379900 Sobic003G042200--Sobic003G379900 Sobic010G009600 Sobic010G009600 Sobic003G042200--Sobic010G009600 Sobic002G349000 Sobic002G349000 Sobic003G042200--Sobic002G349000 Sobic002G238800 Sobic002G238800 Sobic003G042200--Sobic002G238800 Sobic008G174500--Sobic003G042200 Sobic008G174500--Sobic003G062101 Sobic008G174500--Sobic001G194100 Sobic008G174500--Sobic006G184200 Sobic008G174500--Sobic010G009600 Sobic008G174500--Sobic009G156200 Sobic004G014100 Sobic004G014100 Sobic008G174500--Sobic004G014100 Sobic010G223500 Sobic010G223500 Sobic008G174500--Sobic010G223500 Sobic006G100266 Sobic006G100266 Sobic008G174500--Sobic006G100266 Sobic001G194100--Sobic003G062101 Sobic004G163700 Sobic004G163700 Sobic001G194100--Sobic004G163700 Sobic001G194100--Sobic003G042200 Sobic004G065800 Sobic004G065800 Sobic001G194100--Sobic004G065800 Sobic001G194100--Sobic008G174500 Sobic004G262100 Sobic004G262100 Sobic001G194100--Sobic004G262100 Sobic004G339900 Sobic004G339900 Sobic001G194100--Sobic004G339900 Sobic002G420400 Sobic002G420400 Sobic001G194100--Sobic002G420400 Sobic002G354800 Sobic002G354800 Sobic001G194100--Sobic002G354800 Sobic003G062101--Sobic008G174500 Sobic003G062101--Sobic001G194100 Sobic003G062101--Sobic003G042200 Sobic003G062101--Sobic004G262100 Sobic003G062101--Sobic004G065800 Sobic003G062101--Sobic009G156200 Sobic003G062101--Sobic010G223500 Sobic003G062101--Sobic004G339900 Sobic004G071050 Sobic004G071050 Sobic003G062101--Sobic004G071050 Sobic009G156200--Sobic004G262100 Sobic001G053700 Sobic001G053700 Sobic009G156200--Sobic001G053700 Sobic009G156200--Sobic002G349000 Sobic002G360900 Sobic002G360900 Sobic009G156200--Sobic002G360900 Sobic009G156200--Sobic003G042200 Sobic004G340566 Sobic004G340566 Sobic009G156200--Sobic004G340566 Sobic002G381750 Sobic002G381750 Sobic009G156200--Sobic002G381750 Sobic009G234500 Sobic009G234500 Sobic009G156200--Sobic009G234500 Sobic009G156200--Sobic003G062101 Sobic008G160600 Sobic008G160600 Sobic006G184200--Sobic008G160600 Sobic010G038900 Sobic010G038900 Sobic006G184200--Sobic010G038900 Sobic006G184200--Sobic002G354800 Sobic006G184200--Sobic008G174500 Sobic006G184200--Sobic003G042200 Sobic002G230400 Sobic002G230400 Sobic006G184200--Sobic002G230400 Sobic008G087200 Sobic008G087200 Sobic006G184200--Sobic008G087200 Sobic006G184200--Sobic010G009600 Sobic006G184200--Sobic003G379900 Sobic003G379900--Sobic002G238800 Sobic003G379900--Sobic002G420400 Sobic005G034200 Sobic005G034200 Sobic003G379900--Sobic005G034200 Sobic010G087100 Sobic010G087100 Sobic003G379900--Sobic010G087100 Sobic003G379900--Sobic003G042200 Sobic003G379900--Sobic004G339900 Sobic001G081800 Sobic001G081800 Sobic003G379900--Sobic001G081800 Sobic003G379900--Sobic006G184200 Sobic005G036200 Sobic005G036200 Sobic003G379900--Sobic005G036200 Sobic010G257500 Sobic010G257500 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic010G009600--Sobic008G160600 Sobic001G534400 Sobic001G534400 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic010G009600--Sobic006G184200 Sobic002G221100 Sobic002G221100 Sobic002G349000--Sobic002G221100 Sobic001G324800 Sobic001G324800 Sobic002G349000--Sobic001G324800 Sobic006G143300 Sobic006G143300 Sobic002G349000--Sobic006G143300 Sobic004G218000 Sobic004G218000 Sobic002G349000--Sobic004G218000 Sobic002G349000--Sobic002G354800 Sobic002G349000--Sobic004G014100 Sobic002G349000--Sobic009G156200 Sobic001G425900 Sobic001G425900 Sobic002G349000--Sobic001G425900 Sobic002G349000--Sobic004G262100 Sobic002G238800--Sobic003G379900 Sobic002G238800--Sobic001G081800 Sobic005G172700 Sobic005G172700 Sobic002G238800--Sobic005G172700 Sobic001G506300 Sobic001G506300 Sobic002G238800--Sobic001G506300 Sobic002G238800--Sobic003G042200 Sobic002G238800--Sobic010G087100 Sobic002G238800--Sobic004G218000 Sobic002G238800--Sobic002G354800 Sobic002G238800--Sobic002G349000
Octagon: transcription factors


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