Gene annotation
| Transcriptome id | Sobic.004G262100.1 |
|---|---|
| Synonym | HMGR1, Sb04g030030, HMG1 |
| Functional annotation | 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed |
| UniProt | C6JRN9 , C5XZX3 |
| Pfam | PF00368 |
| Panther DB | PTHR10572 PTHR10572:SF14 |
| NCBI CDD | - |
| KEGG Orthology | K00021; hydroxymethylglutaryl-CoA reductase (NADPH) |
| Gene Ontology | GO:0015936; coenzyme A metabolic process GO:0004420hydroxymethylglutaryl-CoA reductase (NADPH) activity |
Orthologs (automatic annotation)
| TAIR | AT1G76490 : hydroxy methylglutaryl CoA reductase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g40180.1 : 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032512 , Zm00025a021798 |
| Brachypodium | KQK01004 , KQK01005 , PNT69303 |
| Barley | HORVU6Hr1G070060.9 , HORVU6Hr1G070060.8 , HORVU6Hr1G070060.1 , HORVU6Hr1G070060.3 , HORVU6Hr1G070060.2 , HORVU6Hr1G070060.5 , HORVU6Hr1G070060.4 , HORVU6Hr1G070060.7 , HORVU6Hr1G070060.6 |
| Wheat | TraesCS6B02G306000 , TraesCS5A02G269300 , TraesCS6A02G277800 , TraesCS6D02G258300 , TraesCS6B02G306000 |
| Populus | - |
JBrowse
| Sobic.004G262100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G015800 | OsFBD13 - F-box and FBD domain containing protein, expressed | - |
| 2 | Sobic.003G092600 | seven in absentia protein family protein, expressed | - |
| 3 | Sobic.001G324800 | cysteine proteinase inhibitor 8 precursor, putative, expressed | - |
| 4 | Sobic.001G509100 | expressed protein | - |
| 5 | Sobic.002G360900 | GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed | - |
| 6 | Sobic.001G261529 | - | - |
| 7 | Sobic.005G083280 | - | - |
| 8 | Sobic.003G101200 | paired amphipathic helix repeat-containing protein, putative, expressed | - |
| 9 | Sobic.010G022600 | encodes granule-bound ADP-glucose-gluosyl transferase(PubMedID : 20585750)@-(PubMedID : 9866201)@starch synthase, putative, expressed | K13679: granule-bound starch synthase |
| 10 | Sobic.006G015800 | "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed | - |
| 11 | Sobic.002G099866 | - | - |
| 12 | Sobic.010G107300 | - | - |
| 13 | Sobic.010G273800 | "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 14 | Sobic.005G083160 | - | - |
| 15 | Sobic.001G425900 | EDM2, putative, expressed | - |
| 16 | Sobic.009G234500 | similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed | - |
| 17 | Sobic.004G322901 | - | - |
| 18 | Sobic.004G196800 | tetratricopeptide repeat containing protein, putative, expressed | - |
| 19 | Sobic.010G118200 | phosphatidylinositol 3- and 4-kinase family protein, putative, expressed | - |
| 20 | Sobic.004G163700 | "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
Gene co-expression network
Octagon: transcription factors
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