Gene annotation
Transcriptome id Sobic.002G015800.3
Synonym
Functional annotation OsFBD13 - F-box and FBD domain containing protein, expressed
UniProt A0A1W0W1S5
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G49030 : FBD, F-box and Leucine Rich Repeat domains containing protein
RAP-DB (Rice) LOC_Os07g02760.2 : OsFBD13 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G092600 seven in absentia protein family protein, expressed -
2 Sobic.001G261529 - -
3 Sobic.005G083280 - -
4 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
5 Sobic.001G509100 expressed protein -
6 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
7 Sobic.010G022600 encodes granule-bound ADP-glucose-gluosyl transferase(PubMedID : 20585750)@-(PubMedID : 9866201)@starch synthase, putative, expressed K13679: granule-bound starch synthase
8 Sobic.010G107300 - -
9 Sobic.004G322901 - -
10 Sobic.005G083160 - -
11 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
12 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
13 Sobic.002G099866 - -
14 Sobic.009G014900 expressed protein -
15 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
17 Sobic.002G021600 OsFBX234 - F-box domain containing protein, expressed -
18 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
19 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
20 Sobic.001G175501 - -


Gene co-expression network
sample Sobic002G015800 Sobic002G015800 Sobic003G092600 Sobic003G092600 Sobic002G015800--Sobic003G092600 Sobic001G261529 Sobic001G261529 Sobic002G015800--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic002G015800--Sobic005G083280 Sobic004G262100 Sobic004G262100 Sobic002G015800--Sobic004G262100 Sobic001G509100 Sobic001G509100 Sobic002G015800--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic002G015800--Sobic001G324800 Sobic010G022600 Sobic010G022600 Sobic002G015800--Sobic010G022600 Sobic010G107300 Sobic010G107300 Sobic002G015800--Sobic010G107300 Sobic004G322901 Sobic004G322901 Sobic002G015800--Sobic004G322901 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic001G261529--Sobic005G083280 Sobic001G261529--Sobic004G322901 Sobic001G264600 Sobic001G264600 Sobic001G261529--Sobic001G264600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic002G266600 Sobic002G266600 Sobic001G261529--Sobic002G266600 Sobic007G086701 Sobic007G086701 Sobic001G261529--Sobic007G086701 Sobic006G018751 Sobic006G018751 Sobic001G261529--Sobic006G018751 Sobic002G099866 Sobic002G099866 Sobic001G261529--Sobic002G099866 Sobic005G083280--Sobic001G261529 Sobic005G083280--Sobic004G322901 Sobic005G083280--Sobic003G092600 Sobic005G083280--Sobic002G015800 Sobic005G083280--Sobic001G264600 Sobic005G083280--Sobic006G018751 Sobic005G083280--Sobic006G015800 Sobic005G083280--Sobic007G086701 Sobic005G083280--Sobic009G014900 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic004G262100--Sobic001G324800 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic004G262100--Sobic001G261529 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic004G262100--Sobic010G022600 Sobic001G509100--Sobic002G099866 Sobic001G509100--Sobic002G015800 Sobic001G509100--Sobic003G092600 Sobic003G035001 Sobic003G035001 Sobic001G509100--Sobic003G035001 Sobic001G509100--Sobic004G262100 Sobic001G509100--Sobic002G266600 Sobic001G509100--Sobic001G261529 Sobic009G132400 Sobic009G132400 Sobic001G509100--Sobic009G132400 Sobic001G509100--Sobic003G101200 Sobic001G324800--Sobic003G092600 Sobic001G394900 Sobic001G394900 Sobic001G324800--Sobic001G394900 Sobic001G324800--Sobic002G015800 Sobic001G324800--Sobic002G360900 Sobic001G324800--Sobic004G262100 Sobic001G324800--Sobic006G015800 Sobic001G324800--Sobic010G022600 Sobic001G324800--Sobic001G509100 Sobic001G324800--Sobic010G107300 Sobic005G226150 Sobic005G226150 Sobic010G022600--Sobic005G226150 Sobic010G022600--Sobic010G107300 Sobic002G417900 Sobic002G417900 Sobic010G022600--Sobic002G417900 Sobic004G085100 Sobic004G085100 Sobic010G022600--Sobic004G085100 Sobic001G362900 Sobic001G362900 Sobic010G022600--Sobic001G362900 Sobic002G088000 Sobic002G088000 Sobic010G022600--Sobic002G088000 Sobic005G083160 Sobic005G083160 Sobic010G022600--Sobic005G083160 Sobic004G171500 Sobic004G171500 Sobic010G022600--Sobic004G171500 Sobic001G297800 Sobic001G297800 Sobic010G022600--Sobic001G297800 Sobic010G107300--Sobic005G083160 Sobic010G107300--Sobic005G226150 Sobic010G107300--Sobic010G022600 Sobic008G088881 Sobic008G088881 Sobic010G107300--Sobic008G088881 Sobic010G107300--Sobic002G360900 Sobic001G233900 Sobic001G233900 Sobic010G107300--Sobic001G233900 Sobic003G247700 Sobic003G247700 Sobic010G107300--Sobic003G247700 Sobic003G323000 Sobic003G323000 Sobic010G107300--Sobic003G323000 Sobic007G070700 Sobic007G070700 Sobic010G107300--Sobic007G070700 Sobic004G322901--Sobic005G083280 Sobic004G322901--Sobic001G261529 Sobic004G322901--Sobic003G092600 Sobic004G322901--Sobic009G014900 Sobic004G322901--Sobic006G015800 Sobic007G126000 Sobic007G126000 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic004G322901--Sobic006G018751 Sobic004G322901--Sobic002G015800
Octagon: transcription factors


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