Gene annotation
Transcriptome id Sobic.002G238800.1
Synonym Sb02g027660, MEE63, MAGO, HAP1
Functional annotation mago nashi, putative, expressed
UniProt C5X3P5
Pfam PF02792
Panther DB PTHR12638
NCBI CDD KOG3392; Exon-exon junction complex, Magoh component
KEGG Orthology K12877; protein mago nashi
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G02140 : mago nashi family protein
RAP-DB (Rice) LOC_Os12g18880.1 : mago nashi, putative, expressed
MaizeGDB (Corn) Zm00025a030308 , Zm00025a055902 , Zm00025a040170
Brachypodium KQJ94796
Barley HORVU7Hr1G077420.4 , HORVU7Hr1G077420.1 , HORVU7Hr1G077420.3 , HORVU7Hr1G077420.2
Wheat TraesCS7B02G224300 , TraesCS7D02G320000 , TraesCS7A02G323400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
2 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
3 Sobic.005G172700 expressed protein -
4 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
5 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
7 Sobic.004G218000 SET domain containing protein, expressed -
8 Sobic.002G354800 zinc finger family protein, putative, expressed -
9 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
10 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
11 Sobic.001G534400 - -
12 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
13 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
14 Sobic.010G257500 expressed protein -
15 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G081700 - -
17 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
18 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
19 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
20 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G238800 Sobic002G238800 Sobic003G379900 Sobic003G379900 Sobic002G238800--Sobic003G379900 Sobic001G081800 Sobic001G081800 Sobic002G238800--Sobic001G081800 Sobic005G172700 Sobic005G172700 Sobic002G238800--Sobic005G172700 Sobic001G506300 Sobic001G506300 Sobic002G238800--Sobic001G506300 Sobic003G042200 Sobic003G042200 Sobic002G238800--Sobic003G042200 Sobic010G087100 Sobic010G087100 Sobic002G238800--Sobic010G087100 Sobic004G218000 Sobic004G218000 Sobic002G238800--Sobic004G218000 Sobic002G354800 Sobic002G354800 Sobic002G238800--Sobic002G354800 Sobic002G349000 Sobic002G349000 Sobic002G238800--Sobic002G349000 Sobic003G379900--Sobic002G238800 Sobic002G420400 Sobic002G420400 Sobic003G379900--Sobic002G420400 Sobic005G034200 Sobic005G034200 Sobic003G379900--Sobic005G034200 Sobic003G379900--Sobic010G087100 Sobic003G379900--Sobic003G042200 Sobic004G339900 Sobic004G339900 Sobic003G379900--Sobic004G339900 Sobic003G379900--Sobic001G081800 Sobic006G184200 Sobic006G184200 Sobic003G379900--Sobic006G184200 Sobic005G036200 Sobic005G036200 Sobic003G379900--Sobic005G036200 Sobic001G081800--Sobic002G238800 Sobic006G143300 Sobic006G143300 Sobic001G081800--Sobic006G143300 Sobic002G335500 Sobic002G335500 Sobic001G081800--Sobic002G335500 Sobic001G081800--Sobic002G354800 Sobic005G164800 Sobic005G164800 Sobic001G081800--Sobic005G164800 Sobic002G343000 Sobic002G343000 Sobic001G081800--Sobic002G343000 Sobic001G171100 Sobic001G171100 Sobic001G081800--Sobic001G171100 Sobic005G033700 Sobic005G033700 Sobic001G081800--Sobic005G033700 Sobic001G081800--Sobic003G379900 Sobic005G172700--Sobic002G238800 Sobic003G289700 Sobic003G289700 Sobic005G172700--Sobic003G289700 Sobic008G180400 Sobic008G180400 Sobic005G172700--Sobic008G180400 Sobic005G172700--Sobic001G081800 Sobic005G172700--Sobic005G164800 Sobic005G172700--Sobic004G218000 Sobic003G343200 Sobic003G343200 Sobic005G172700--Sobic003G343200 Sobic001G137400 Sobic001G137400 Sobic005G172700--Sobic001G137400 Sobic007G056900 Sobic007G056900 Sobic005G172700--Sobic007G056900 Sobic001G506300--Sobic010G087100 Sobic001G506300--Sobic002G238800 Sobic002G131100 Sobic002G131100 Sobic001G506300--Sobic002G131100 Sobic006G095300 Sobic006G095300 Sobic001G506300--Sobic006G095300 Sobic006G081700 Sobic006G081700 Sobic001G506300--Sobic006G081700 Sobic010G030000 Sobic010G030000 Sobic001G506300--Sobic010G030000 Sobic001G118800 Sobic001G118800 Sobic001G506300--Sobic001G118800 Sobic001G506300--Sobic003G379900 Sobic010G257500 Sobic010G257500 Sobic001G506300--Sobic010G257500 Sobic008G174500 Sobic008G174500 Sobic003G042200--Sobic008G174500 Sobic001G194100 Sobic001G194100 Sobic003G042200--Sobic001G194100 Sobic003G062101 Sobic003G062101 Sobic003G042200--Sobic003G062101 Sobic009G156200 Sobic009G156200 Sobic003G042200--Sobic009G156200 Sobic003G042200--Sobic006G184200 Sobic003G042200--Sobic003G379900 Sobic010G009600 Sobic010G009600 Sobic003G042200--Sobic010G009600 Sobic003G042200--Sobic002G349000 Sobic003G042200--Sobic002G238800 Sobic002G095300 Sobic002G095300 Sobic010G087100--Sobic002G095300 Sobic010G087100--Sobic003G379900 Sobic010G087100--Sobic001G506300 Sobic010G087100--Sobic002G131100 Sobic008G090400 Sobic008G090400 Sobic010G087100--Sobic008G090400 Sobic008G118100 Sobic008G118100 Sobic010G087100--Sobic008G118100 Sobic010G087100--Sobic002G238800 Sobic008G160600 Sobic008G160600 Sobic010G087100--Sobic008G160600 Sobic009G002200 Sobic009G002200 Sobic010G087100--Sobic009G002200 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic002G230400 Sobic002G230400 Sobic002G354800--Sobic002G230400 Sobic002G315100 Sobic002G315100 Sobic002G354800--Sobic002G315100 Sobic002G354800--Sobic006G184200 Sobic002G354800--Sobic002G349000 Sobic002G354800--Sobic001G081800 Sobic004G014100 Sobic004G014100 Sobic002G354800--Sobic004G014100 Sobic002G354800--Sobic006G143300 Sobic003G055200 Sobic003G055200 Sobic002G354800--Sobic003G055200 Sobic001G278700 Sobic001G278700 Sobic002G354800--Sobic001G278700 Sobic002G349000--Sobic002G221100 Sobic001G324800 Sobic001G324800 Sobic002G349000--Sobic001G324800 Sobic002G349000--Sobic006G143300 Sobic002G349000--Sobic004G218000 Sobic002G349000--Sobic002G354800 Sobic002G349000--Sobic004G014100 Sobic002G349000--Sobic009G156200 Sobic001G425900 Sobic001G425900 Sobic002G349000--Sobic001G425900 Sobic004G262100 Sobic004G262100 Sobic002G349000--Sobic004G262100
Octagon: transcription factors


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