Gene annotation
Transcriptome id Sobic.003G423800.1,Sobic.003G423800.2
Synonym MUS81, ATMUS81
Functional annotation endonuclease, putative, expressed
UniProt A0A1W0W1G4 , A0A1B6Q861
Pfam PF02732
Panther DB PTHR13451 PTHR13451:SF0
NCBI CDD KOG2379; Endonuclease MUS81
KEGG Orthology K08991; crossover junction endonuclease MUS81
Gene Ontology GO:0004518; nuclease activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G30870 : Restriction endonuclease, type II-like superfamily protein
RAP-DB (Rice) LOC_Os01g71960.1 : endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a026036
Brachypodium -
Barley HORVU3Hr1G106210.21 , HORVU3Hr1G106210.33 , HORVU3Hr1G106210.31 , HORVU3Hr1G106210.30 , HORVU3Hr1G106210.36 , HORVU3Hr1G106210.35 , HORVU3Hr1G106210.20 , HORVU3Hr1G106210.22 , HORVU3Hr1G106210.24 , HORVU3Hr1G106210.25 , HORVU3Hr1G106210.26 , HORVU3Hr1G106210.27 , HORVU3Hr1G106210.28 , HORVU3Hr1G106210.29 , HORVU3Hr1G106210.34 , HORVU3Hr1G106210.15 , HORVU3Hr1G106210.14 , HORVU3Hr1G106210.17 , HORVU3Hr1G106210.16 , HORVU3Hr1G106210.11 , HORVU3Hr1G106210.10 , HORVU3Hr1G106210.13 , HORVU3Hr1G106210.19 , HORVU3Hr1G106210.18 , HORVU3Hr1G106210.8 , HORVU3Hr1G106210.3 , HORVU3Hr1G106210.5 , HORVU3Hr1G106210.7 , HORVU3Hr1G106210.9
Wheat TraesCS3D02G482500 , TraesCS3D02G482500 , TraesCS3D02G482500 , TraesCS6A02G144500 , TraesCS7B02G011000 , TraesCS1B02G105000 , TraesCS3D02G192600 , TraesCS3B02G535000 , TraesCS3B02G535000 , TraesCS3A02G188900 , TraesCS3A02G188900 , TraesCS3B02G489200 , TraesCS1B02G122400 , TraesCS3A02G487200 , TraesCS3A02G487200 , TraesCS3A02G487200 , TraesCS7D02G490700 , TraesCS3B02G534900 , TraesCS1D02G082300
Populus PNT46614 , PNT46613 , PNT46612


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
2 Sobic.008G180200 expressed protein -
3 Sobic.010G222800 expressed protein -
4 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
6 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
8 Sobic.002G112000 protein binding protein, putative, expressed -
9 Sobic.007G014100 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.002G286632 - -
11 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
12 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
13 Sobic.010G257500 expressed protein -
14 Sobic.010G243100 RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
15 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
16 Sobic.002G052800 FAR1 family protein, expressed -
17 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
18 Sobic.008G046200 PHD-finger family protein, expressed -
19 Sobic.003G005500 B3 DNA binding domain containing protein, expressed -
20 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -


Gene co-expression network
sample Sobic003G423800 Sobic003G423800 Sobic008G180400 Sobic008G180400 Sobic003G423800--Sobic008G180400 Sobic008G180200 Sobic008G180200 Sobic003G423800--Sobic008G180200 Sobic010G222800 Sobic010G222800 Sobic003G423800--Sobic010G222800 Sobic009G012400 Sobic009G012400 Sobic003G423800--Sobic009G012400 Sobic003G343200 Sobic003G343200 Sobic003G423800--Sobic003G343200 Sobic003G129500 Sobic003G129500 Sobic003G423800--Sobic003G129500 Sobic010G009700 Sobic010G009700 Sobic003G423800--Sobic010G009700 Sobic002G112000 Sobic002G112000 Sobic003G423800--Sobic002G112000 Sobic007G014100 Sobic007G014100 Sobic003G423800--Sobic007G014100 Sobic008G180400--Sobic003G423800 Sobic005G172700 Sobic005G172700 Sobic008G180400--Sobic005G172700 Sobic008G180400--Sobic008G180200 Sobic003G091300 Sobic003G091300 Sobic008G180400--Sobic003G091300 Sobic001G457600 Sobic001G457600 Sobic008G180400--Sobic001G457600 Sobic002G258000 Sobic002G258000 Sobic008G180400--Sobic002G258000 Sobic010G243100 Sobic010G243100 Sobic008G180400--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic008G180400--Sobic003G289700 Sobic008G180400--Sobic002G112000 Sobic008G180200--Sobic003G423800 Sobic008G180200--Sobic008G180400 Sobic003G005500 Sobic003G005500 Sobic008G180200--Sobic003G005500 Sobic002G286632 Sobic002G286632 Sobic008G180200--Sobic002G286632 Sobic003G216600 Sobic003G216600 Sobic008G180200--Sobic003G216600 Sobic008G180200--Sobic010G009700 Sobic010G030000 Sobic010G030000 Sobic008G180200--Sobic010G030000 Sobic006G081700 Sobic006G081700 Sobic008G180200--Sobic006G081700 Sobic008G180200--Sobic007G014100 Sobic010G222800--Sobic003G343200 Sobic010G024000 Sobic010G024000 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic009G012400--Sobic003G423800 Sobic009G012400--Sobic003G129500 Sobic009G012400--Sobic002G112000 Sobic009G012400--Sobic007G014100 Sobic008G046200 Sobic008G046200 Sobic009G012400--Sobic008G046200 Sobic009G136000 Sobic009G136000 Sobic009G012400--Sobic009G136000 Sobic009G012400--Sobic010G222800 Sobic003G002000 Sobic003G002000 Sobic009G012400--Sobic003G002000 Sobic009G012400--Sobic010G024000 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic003G343200--Sobic010G024000 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic003G129500--Sobic002G112000 Sobic002G168000 Sobic002G168000 Sobic003G129500--Sobic002G168000 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic004G298600 Sobic004G298600 Sobic010G009700--Sobic004G298600 Sobic001G131900 Sobic001G131900 Sobic010G009700--Sobic001G131900 Sobic010G038200 Sobic010G038200 Sobic010G009700--Sobic010G038200 Sobic006G189000 Sobic006G189000 Sobic010G009700--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic002G322700 Sobic002G322700 Sobic010G009700--Sobic002G322700 Sobic002G151500 Sobic002G151500 Sobic010G009700--Sobic002G151500 Sobic007G102300 Sobic007G102300 Sobic010G009700--Sobic007G102300 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic007G014100--Sobic003G423800 Sobic007G014100--Sobic009G012400 Sobic007G014100--Sobic008G180200 Sobic007G014100--Sobic003G005500 Sobic007G014100--Sobic008G180400 Sobic007G014100--Sobic008G046200 Sobic001G095432 Sobic001G095432 Sobic007G014100--Sobic001G095432 Sobic010G111750 Sobic010G111750 Sobic007G014100--Sobic010G111750 Sobic007G014100--Sobic003G129500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.