Gene annotation
Transcriptome id Sobic.006G184200.1
Synonym BB, BB2, Sb06g025850
Functional annotation zinc RING finger protein, putative, expressed
UniProt C5YE43
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF75
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11 KOG0320Predicted E3 ubiquitin ligase
KEGG Orthology K19045; E3 ubiquitin-protein ligase BIG BROTHER and related proteins
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G63530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g48260.1 : zinc RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a010161
Brachypodium PNT61693
Barley HORVU2Hr1G094980.4 , HORVU2Hr1G094980.5 , HORVU2Hr1G094980.6 , HORVU2Hr1G094980.7 , HORVU2Hr1G094980.2 , HORVU2Hr1G094980.3 , HORVU2Hr1G094980.8 , HORVU2Hr1G094980.9 , HORVU2Hr1G094980.16 , HORVU2Hr1G094980.17 , HORVU2Hr1G094980.14 , HORVU2Hr1G094980.15 , HORVU2Hr1G094980.12 , HORVU2Hr1G094980.13 , HORVU2Hr1G094980.10 , HORVU2Hr1G094980.11
Wheat TraesCS2A02G400200 , TraesCS2B02G418300 , TraesCS2D02G397800 , TraesCS2D02G397800
Populus -


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cDNA sequences
Sobic.006G184200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160600 tesmin/TSO1-like CXC domain containing protein, expressed -
2 Sobic.010G038900 expressed protein -
3 Sobic.002G354800 zinc finger family protein, putative, expressed -
4 Sobic.008G174500 expressed protein -
5 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
7 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
9 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
10 Sobic.010G257500 expressed protein -
11 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
12 Sobic.010G223500 dnaJ domain containing protein, expressed -
13 Sobic.001G534400 - -
14 Sobic.004G340100 PB1 domain containing protein, expressed -
15 Sobic.001G194100 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
16 Sobic.006G170700 START domain containing protein, putative, expressed -
17 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
18 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
19 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
20 Sobic.006G091850 - -


Gene co-expression network
sample Sobic006G184200 Sobic006G184200 Sobic008G160600 Sobic008G160600 Sobic006G184200--Sobic008G160600 Sobic010G038900 Sobic010G038900 Sobic006G184200--Sobic010G038900 Sobic002G354800 Sobic002G354800 Sobic006G184200--Sobic002G354800 Sobic008G174500 Sobic008G174500 Sobic006G184200--Sobic008G174500 Sobic003G042200 Sobic003G042200 Sobic006G184200--Sobic003G042200 Sobic002G230400 Sobic002G230400 Sobic006G184200--Sobic002G230400 Sobic008G087200 Sobic008G087200 Sobic006G184200--Sobic008G087200 Sobic010G009600 Sobic010G009600 Sobic006G184200--Sobic010G009600 Sobic003G379900 Sobic003G379900 Sobic006G184200--Sobic003G379900 Sobic008G160600--Sobic006G184200 Sobic008G160600--Sobic010G009600 Sobic010G223500 Sobic010G223500 Sobic008G160600--Sobic010G223500 Sobic010G257500 Sobic010G257500 Sobic008G160600--Sobic010G257500 Sobic001G485500 Sobic001G485500 Sobic008G160600--Sobic001G485500 Sobic004G198300 Sobic004G198300 Sobic008G160600--Sobic004G198300 Sobic010G018900 Sobic010G018900 Sobic008G160600--Sobic010G018900 Sobic008G160600--Sobic008G087200 Sobic004G215200 Sobic004G215200 Sobic008G160600--Sobic004G215200 Sobic010G038900--Sobic006G184200 Sobic002G066800 Sobic002G066800 Sobic010G038900--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic010G038900--Sobic004G350200 Sobic010G038900--Sobic008G087200 Sobic010G038900--Sobic010G257500 Sobic010G038900--Sobic010G018900 Sobic005G160200 Sobic005G160200 Sobic010G038900--Sobic005G160200 Sobic004G063300 Sobic004G063300 Sobic010G038900--Sobic004G063300 Sobic010G038900--Sobic010G009600 Sobic002G354800--Sobic002G230400 Sobic002G315100 Sobic002G315100 Sobic002G354800--Sobic002G315100 Sobic002G354800--Sobic006G184200 Sobic002G349000 Sobic002G349000 Sobic002G354800--Sobic002G349000 Sobic001G081800 Sobic001G081800 Sobic002G354800--Sobic001G081800 Sobic004G014100 Sobic004G014100 Sobic002G354800--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G354800--Sobic006G143300 Sobic003G055200 Sobic003G055200 Sobic002G354800--Sobic003G055200 Sobic001G278700 Sobic001G278700 Sobic002G354800--Sobic001G278700 Sobic008G174500--Sobic003G042200 Sobic003G062101 Sobic003G062101 Sobic008G174500--Sobic003G062101 Sobic001G194100 Sobic001G194100 Sobic008G174500--Sobic001G194100 Sobic008G174500--Sobic006G184200 Sobic008G174500--Sobic010G009600 Sobic009G156200 Sobic009G156200 Sobic008G174500--Sobic009G156200 Sobic008G174500--Sobic004G014100 Sobic008G174500--Sobic010G223500 Sobic006G100266 Sobic006G100266 Sobic008G174500--Sobic006G100266 Sobic003G042200--Sobic008G174500 Sobic003G042200--Sobic001G194100 Sobic003G042200--Sobic003G062101 Sobic003G042200--Sobic009G156200 Sobic003G042200--Sobic006G184200 Sobic003G042200--Sobic003G379900 Sobic003G042200--Sobic010G009600 Sobic003G042200--Sobic002G349000 Sobic002G238800 Sobic002G238800 Sobic003G042200--Sobic002G238800 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic004G075700 Sobic004G075700 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic002G274700 Sobic002G274700 Sobic008G087200--Sobic002G274700 Sobic008G087200--Sobic006G100266 Sobic008G087200--Sobic010G009600 Sobic001G534400 Sobic001G534400 Sobic008G087200--Sobic001G534400 Sobic008G087200--Sobic010G038900 Sobic006G272300 Sobic006G272300 Sobic008G087200--Sobic006G272300 Sobic008G087200--Sobic006G184200 Sobic008G087200--Sobic010G018900 Sobic003G343200 Sobic003G343200 Sobic008G087200--Sobic003G343200 Sobic010G009600--Sobic010G257500 Sobic010G009600--Sobic002G274700 Sobic010G009600--Sobic008G160600 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic010G009600--Sobic004G215200 Sobic010G009600--Sobic006G184200 Sobic003G379900--Sobic002G238800 Sobic002G420400 Sobic002G420400 Sobic003G379900--Sobic002G420400 Sobic005G034200 Sobic005G034200 Sobic003G379900--Sobic005G034200 Sobic010G087100 Sobic010G087100 Sobic003G379900--Sobic010G087100 Sobic003G379900--Sobic003G042200 Sobic004G339900 Sobic004G339900 Sobic003G379900--Sobic004G339900 Sobic003G379900--Sobic001G081800 Sobic003G379900--Sobic006G184200 Sobic005G036200 Sobic005G036200 Sobic003G379900--Sobic005G036200
Octagon: transcription factors


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