Gene annotation
Transcriptome id Sobic.002G315100.1
Synonym Sb02g034440
Functional annotation expressed protein
UniProt C5X9Y6
Pfam PF00097 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF763
NCBI CDD -
KEGG Orthology K15083; DNA repair protein RAD16
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G05120 : Helicase protein with RING/U-box domain
RAP-DB (Rice) LOC_Os07g32730.1 : DNA repair protein rhp16, putative, expressed
MaizeGDB (Corn) Zm00025a038998 , Zm00025a020254 , Zm00025a048200
Brachypodium KQK16045
Barley HORVU2Hr1G047010.7 , HORVU5Hr1G086530.1 , HORVU2Hr1G047010.14 , HORVU2Hr1G047010.16 , HORVU2Hr1G047010.17 , HORVU2Hr1G047010.13 , HORVU2Hr1G047010.18 , HORVU2Hr1G047010.19 , HORVU2Hr1G047010.8 , HORVU2Hr1G047010.9 , HORVU2Hr1G047010.6 , HORVU2Hr1G047010.4 , HORVU2Hr1G047010.5 , HORVU2Hr1G047010.2 , HORVU2Hr1G047010.3 , HORVU2Hr1G047010.1 , HORVU6Hr1G075740.1 , HORVU2Hr1G047010.15 , HORVU2Hr1G047010.10 , HORVU2Hr1G047010.11 , HORVU2Hr1G047010.29 , HORVU2Hr1G047010.28 , HORVU2Hr1G047010.21 , HORVU2Hr1G047010.20 , HORVU2Hr1G047010.23 , HORVU2Hr1G047010.22 , HORVU2Hr1G047010.25 , HORVU2Hr1G047010.24 , HORVU2Hr1G047010.27 , HORVU2Hr1G047010.26 , HORVU2Hr1G047010.12
Wheat TraesCS2A02G224300 , TraesCS2A02G224300 , TraesCS2A02G224300 , TraesCS2B02G274500 , TraesCS2B02G274500 , TraesCS2D02G230600 , TraesCS2D02G230600 , TraesCS1B02G074500 , TraesCS1B02G074500
Populus -


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cDNA sequences
Sobic.002G315100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G354800 zinc finger family protein, putative, expressed -
2 Sobic.006G091850 - -
3 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
4 Sobic.003G055200 expressed protein -
5 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
6 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
7 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
8 Sobic.009G069200 glycine-rich protein, putative, expressed -
9 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
10 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
11 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
12 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
15 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
16 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
17 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
18 Sobic.006G170700 START domain containing protein, putative, expressed -
19 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
20 Sobic.010G193700 expressed protein -


Gene co-expression network
sample Sobic002G315100 Sobic002G315100 Sobic002G354800 Sobic002G354800 Sobic002G315100--Sobic002G354800 Sobic006G091850 Sobic006G091850 Sobic002G315100--Sobic006G091850 Sobic005G160200 Sobic005G160200 Sobic002G315100--Sobic005G160200 Sobic003G055200 Sobic003G055200 Sobic002G315100--Sobic003G055200 Sobic002G230400 Sobic002G230400 Sobic002G315100--Sobic002G230400 Sobic004G014100 Sobic004G014100 Sobic002G315100--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G315100--Sobic006G143300 Sobic009G069200 Sobic009G069200 Sobic002G315100--Sobic009G069200 Sobic006G184200 Sobic006G184200 Sobic002G315100--Sobic006G184200 Sobic002G354800--Sobic002G230400 Sobic002G354800--Sobic002G315100 Sobic002G354800--Sobic006G184200 Sobic002G349000 Sobic002G349000 Sobic002G354800--Sobic002G349000 Sobic001G081800 Sobic001G081800 Sobic002G354800--Sobic001G081800 Sobic002G354800--Sobic004G014100 Sobic002G354800--Sobic006G143300 Sobic002G354800--Sobic003G055200 Sobic001G278700 Sobic001G278700 Sobic002G354800--Sobic001G278700 Sobic006G170700 Sobic006G170700 Sobic006G091850--Sobic006G170700 Sobic006G091850--Sobic005G160200 Sobic006G091850--Sobic002G315100 Sobic004G207100 Sobic004G207100 Sobic006G091850--Sobic004G207100 Sobic003G415100 Sobic003G415100 Sobic006G091850--Sobic003G415100 Sobic001G154200 Sobic001G154200 Sobic006G091850--Sobic001G154200 Sobic001G425200 Sobic001G425200 Sobic006G091850--Sobic001G425200 Sobic006G091850--Sobic006G184200 Sobic009G060400 Sobic009G060400 Sobic006G091850--Sobic009G060400 Sobic005G160200--Sobic004G014100 Sobic003G411700 Sobic003G411700 Sobic005G160200--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic005G160200--Sobic003G343200 Sobic005G160200--Sobic006G091850 Sobic005G160200--Sobic002G315100 Sobic010G038900 Sobic010G038900 Sobic005G160200--Sobic010G038900 Sobic010G257500 Sobic010G257500 Sobic005G160200--Sobic010G257500 Sobic001G534400 Sobic001G534400 Sobic005G160200--Sobic001G534400 Sobic004G350200 Sobic004G350200 Sobic005G160200--Sobic004G350200 Sobic003G055200--Sobic002G354800 Sobic010G207900 Sobic010G207900 Sobic003G055200--Sobic010G207900 Sobic003G055200--Sobic002G315100 Sobic003G055200--Sobic001G278700 Sobic003G055200--Sobic002G230400 Sobic004G163700 Sobic004G163700 Sobic003G055200--Sobic004G163700 Sobic002G174500 Sobic002G174500 Sobic003G055200--Sobic002G174500 Sobic007G086701 Sobic007G086701 Sobic003G055200--Sobic007G086701 Sobic006G257600 Sobic006G257600 Sobic003G055200--Sobic006G257600 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic004G075700 Sobic004G075700 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic004G014100--Sobic002G343000 Sobic006G200901 Sobic006G200901 Sobic004G014100--Sobic006G200901 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic004G014100--Sobic003G343200 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G143300--Sobic006G200901 Sobic006G143300--Sobic002G343000 Sobic006G143300--Sobic004G014100 Sobic006G143300--Sobic001G081800 Sobic006G143300--Sobic002G349000 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G143300--Sobic006G186300 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic009G069200--Sobic003G415100 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic008G160600 Sobic008G160600 Sobic006G184200--Sobic008G160600 Sobic006G184200--Sobic010G038900 Sobic006G184200--Sobic002G354800 Sobic008G174500 Sobic008G174500 Sobic006G184200--Sobic008G174500 Sobic003G042200 Sobic003G042200 Sobic006G184200--Sobic003G042200 Sobic006G184200--Sobic002G230400 Sobic008G087200 Sobic008G087200 Sobic006G184200--Sobic008G087200 Sobic010G009600 Sobic010G009600 Sobic006G184200--Sobic010G009600 Sobic003G379900 Sobic003G379900 Sobic006G184200--Sobic003G379900
Octagon: transcription factors


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