Gene annotation
Transcriptome id Sobic.010G193700.1
Synonym Sb10g024320
Functional annotation expressed protein
UniProt C5Z651
Pfam PF08743
Panther DB PTHR16140 PTHR16140:SF4
NCBI CDD KOG2866; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G51130 : Nse4, component of Smc5/6 DNA repair complex
RAP-DB (Rice) LOC_Os06g41380.1 : expressed protein
MaizeGDB (Corn) Zm00025a042117
Brachypodium -
Barley HORVU7Hr1G094270.3 , HORVU7Hr1G094270.2 , HORVU7Hr1G094270.1 , HORVU7Hr1G094270.7 , HORVU7Hr1G094270.5 , HORVU7Hr1G094270.4 , HORVU7Hr1G094270.9 , HORVU7Hr1G094270.8
Wheat TraesCS7D02G396200 , TraesCS7A02G402400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
2 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.004G322901 - -
4 Sobic.003G092600 seven in absentia protein family protein, expressed -
5 Sobic.009G014900 expressed protein -
6 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
7 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
8 Sobic.002G147466 - -
9 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -
10 Sobic.001G394900 expressed protein -
11 Sobic.005G083280 - -
12 Sobic.004G340566 - -
13 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
14 Sobic.001G261529 - -
15 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
16 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
17 Sobic.009G017000 expressed protein -
18 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
19 Sobic.004G218000 SET domain containing protein, expressed -
20 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic010G193700 Sobic010G193700 Sobic001G324800 Sobic001G324800 Sobic010G193700--Sobic001G324800 Sobic004G196800 Sobic004G196800 Sobic010G193700--Sobic004G196800 Sobic004G322901 Sobic004G322901 Sobic010G193700--Sobic004G322901 Sobic003G092600 Sobic003G092600 Sobic010G193700--Sobic003G092600 Sobic009G014900 Sobic009G014900 Sobic010G193700--Sobic009G014900 Sobic002G174500 Sobic002G174500 Sobic010G193700--Sobic002G174500 Sobic006G015800 Sobic006G015800 Sobic010G193700--Sobic006G015800 Sobic002G147466 Sobic002G147466 Sobic010G193700--Sobic002G147466 Sobic004G274500 Sobic004G274500 Sobic010G193700--Sobic004G274500 Sobic001G324800--Sobic003G092600 Sobic001G394900 Sobic001G394900 Sobic001G324800--Sobic001G394900 Sobic002G015800 Sobic002G015800 Sobic001G324800--Sobic002G015800 Sobic002G360900 Sobic002G360900 Sobic001G324800--Sobic002G360900 Sobic004G262100 Sobic004G262100 Sobic001G324800--Sobic004G262100 Sobic001G324800--Sobic006G015800 Sobic010G022600 Sobic010G022600 Sobic001G324800--Sobic010G022600 Sobic001G509100 Sobic001G509100 Sobic001G324800--Sobic001G509100 Sobic010G107300 Sobic010G107300 Sobic001G324800--Sobic010G107300 Sobic009G025100 Sobic009G025100 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic004G196800--Sobic006G015800 Sobic010G207400 Sobic010G207400 Sobic004G196800--Sobic010G207400 Sobic010G047300 Sobic010G047300 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic002G293100 Sobic002G293100 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic005G083280 Sobic005G083280 Sobic004G322901--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic004G322901--Sobic001G261529 Sobic004G322901--Sobic003G092600 Sobic004G322901--Sobic009G014900 Sobic004G322901--Sobic006G015800 Sobic007G126000 Sobic007G126000 Sobic004G322901--Sobic007G126000 Sobic004G322901--Sobic002G147466 Sobic006G018751 Sobic006G018751 Sobic004G322901--Sobic006G018751 Sobic004G322901--Sobic002G015800 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic003G092600--Sobic009G014900 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic009G014900--Sobic003G092600 Sobic009G014900--Sobic004G322901 Sobic009G014900--Sobic002G147466 Sobic003G325800 Sobic003G325800 Sobic009G014900--Sobic003G325800 Sobic009G014900--Sobic006G015800 Sobic003G414000 Sobic003G414000 Sobic009G014900--Sobic003G414000 Sobic009G014900--Sobic005G083280 Sobic002G267700 Sobic002G267700 Sobic009G014900--Sobic002G267700 Sobic003G091500 Sobic003G091500 Sobic009G014900--Sobic003G091500 Sobic002G174500--Sobic002G147466 Sobic002G174500--Sobic004G322901 Sobic010G207900 Sobic010G207900 Sobic002G174500--Sobic010G207900 Sobic002G174500--Sobic007G126000 Sobic002G174500--Sobic005G083280 Sobic002G174500--Sobic001G261529 Sobic002G174500--Sobic006G018751 Sobic002G174500--Sobic009G014900 Sobic007G086701 Sobic007G086701 Sobic002G174500--Sobic007G086701 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic005G124400 Sobic005G124400 Sobic002G147466--Sobic005G124400 Sobic002G147466--Sobic009G014900 Sobic002G147466--Sobic004G322901 Sobic003G211600 Sobic003G211600 Sobic002G147466--Sobic003G211600 Sobic002G147466--Sobic002G174500 Sobic005G174200 Sobic005G174200 Sobic002G147466--Sobic005G174200 Sobic007G032500 Sobic007G032500 Sobic002G147466--Sobic007G032500 Sobic001G374600 Sobic001G374600 Sobic002G147466--Sobic001G374600 Sobic009G062300 Sobic009G062300 Sobic002G147466--Sobic009G062300 Sobic010G037200 Sobic010G037200 Sobic004G274500--Sobic010G037200 Sobic004G274500--Sobic009G025100 Sobic004G274500--Sobic001G394900 Sobic003G402100 Sobic003G402100 Sobic004G274500--Sobic003G402100 Sobic001G170500 Sobic001G170500 Sobic004G274500--Sobic001G170500 Sobic003G304500 Sobic003G304500 Sobic004G274500--Sobic003G304500 Sobic008G039700 Sobic008G039700 Sobic004G274500--Sobic008G039700 Sobic003G303500 Sobic003G303500 Sobic004G274500--Sobic003G303500 Sobic008G037100 Sobic008G037100 Sobic004G274500--Sobic008G037100
Octagon: transcription factors


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