Gene annotation
Transcriptome id Sobic.002G230400.4,Sobic.002G230400.2,Sobic.002G230400.1,Sobic.002G230400.3
Synonym Sb02g026980, UBP17
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1W0W5M9 , A0A1B6QD18 , A0A1W0W5E5 , A0A1B6QD09
Pfam PF01753 PF13423
Panther DB PTHR24006 PTHR24006:SF494
NCBI CDD KOG1865; Ubiquitin carboxyl-terminal hydrolase
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65450 : ubiquitin-specific protease 17
RAP-DB (Rice) LOC_Os09g28940.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047314
Brachypodium -
Barley HORVU7Hr1G064340.5 , HORVU7Hr1G064340.6 , HORVU7Hr1G064340.1 , HORVU7Hr1G064340.2 , HORVU7Hr1G064340.3 , HORVU5Hr1G069620.9 , HORVU5Hr1G069620.6 , HORVU5Hr1G069620.7 , HORVU5Hr1G069620.4 , HORVU5Hr1G069620.5 , HORVU5Hr1G069620.2 , HORVU5Hr1G069620.3 , HORVU5Hr1G069620.1 , HORVU5Hr1G069620.29 , HORVU5Hr1G069620.28 , HORVU5Hr1G069620.21 , HORVU5Hr1G069620.20 , HORVU5Hr1G069620.22 , HORVU5Hr1G069620.25 , HORVU5Hr1G069620.27 , HORVU5Hr1G069620.26 , HORVU5Hr1G069620.30 , HORVU5Hr1G069620.15 , HORVU5Hr1G069620.16 , HORVU5Hr1G069620.17 , HORVU5Hr1G069620.10 , HORVU5Hr1G069620.11 , HORVU5Hr1G069620.13 , HORVU5Hr1G069620.18 , HORVU5Hr1G069620.19
Wheat TraesCS7A02G282200 , TraesCS5D02G252600 , TraesCS5D02G252600 , TraesCS5D02G252600 , TraesCS5A02G246000 , TraesCS5A02G246000 , TraesCS5A02G246000 , TraesCS5B02G243400 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7D02G280800 , TraesCS7A02G282200 , TraesCS7D02G280800 , TraesCS7D02G280800 , TraesCS7D02G280800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G354800 zinc finger family protein, putative, expressed -
2 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
3 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
4 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
5 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
6 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
7 Sobic.010G112700 NHL repeat-containing protein, putative, expressed -
8 Sobic.002G343000 expressed protein -
9 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
10 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
11 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
12 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
13 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
14 Sobic.003G026900 expressed protein -
15 Sobic.010G193700 expressed protein -
16 Sobic.006G200901 - -
17 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
18 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
19 Sobic.003G055200 expressed protein -
20 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G230400 Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic004G075700 Sobic004G075700 Sobic002G230400--Sobic004G075700 Sobic006G143300 Sobic006G143300 Sobic002G230400--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic002G354800--Sobic002G230400 Sobic002G315100 Sobic002G315100 Sobic002G354800--Sobic002G315100 Sobic006G184200 Sobic006G184200 Sobic002G354800--Sobic006G184200 Sobic002G349000 Sobic002G349000 Sobic002G354800--Sobic002G349000 Sobic001G081800 Sobic001G081800 Sobic002G354800--Sobic001G081800 Sobic002G354800--Sobic004G014100 Sobic002G354800--Sobic006G143300 Sobic003G055200 Sobic003G055200 Sobic002G354800--Sobic003G055200 Sobic001G278700 Sobic001G278700 Sobic002G354800--Sobic001G278700 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic004G075700--Sobic006G186300 Sobic010G207400 Sobic010G207400 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic004G075700--Sobic001G305100 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic004G075700--Sobic005G131800 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G200901 Sobic006G200901 Sobic006G143300--Sobic006G200901 Sobic006G143300--Sobic002G343000 Sobic006G143300--Sobic004G014100 Sobic006G143300--Sobic001G081800 Sobic006G143300--Sobic002G349000 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G143300--Sobic006G186300 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic004G163700--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic010G112700--Sobic005G131800 Sobic010G112700--Sobic002G230400 Sobic008G156200 Sobic008G156200 Sobic010G112700--Sobic008G156200 Sobic001G541400 Sobic001G541400 Sobic010G112700--Sobic001G541400 Sobic010G112700--Sobic006G186300 Sobic006G144500 Sobic006G144500 Sobic010G112700--Sobic006G144500 Sobic008G116100 Sobic008G116100 Sobic010G112700--Sobic008G116100 Sobic010G112700--Sobic004G075700 Sobic010G112700--Sobic007G041200 Sobic009G148000 Sobic009G148000 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G253900 Sobic002G253900 Sobic002G343000--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic008G041900 Sobic008G041900 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic010G273800--Sobic006G015800 Sobic010G273800--Sobic003G092600 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100
Octagon: transcription factors


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