Gene annotation
Transcriptome id Sobic.004G340100.1
Synonym
Functional annotation PB1 domain containing protein, expressed
UniProt C5XV79
Pfam PF00564
Panther DB PTHR31066
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G09620 : Octicosapeptide/Phox/Bem1p family protein
RAP-DB (Rice) LOC_Os02g56480.1 : PB1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022556 , Zm00025a032825
Brachypodium KQJ88583 , KQK01288
Barley HORVU6Hr1G089280.9 , HORVU6Hr1G089280.8 , HORVU6Hr1G089280.1 , HORVU6Hr1G089280.3 , HORVU6Hr1G089280.5 , HORVU6Hr1G089280.4 , HORVU6Hr1G089280.7 , HORVU3Hr1G075060.1
Wheat TraesCS6D02G198500 , TraesCS6A02G217000 , TraesCS6B02G245800 , TraesCS6A02G380500
Populus -


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cDNA sequences
Sobic.004G340100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
2 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
3 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
4 Sobic.007G036800 xylosyltransferase, putative, expressed -
5 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G112100 Phospholipid synthesis protein 1 PLS1 (Zm)(PubMedID : 27208977)@acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
7 Sobic.001G534400 - -
8 Sobic.006G272300 pentatricopeptide, putative, expressed -
9 Sobic.006G100266 - -
10 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.006G091850 - -
12 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
13 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
14 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
15 Sobic.006G170700 START domain containing protein, putative, expressed -
16 Sobic.007G010200 - -
17 Sobic.008G160600 tesmin/TSO1-like CXC domain containing protein, expressed -
18 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
19 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
20 Sobic.010G193700 expressed protein -


Gene co-expression network
sample Sobic004G340100 Sobic004G340100 Sobic006G184200 Sobic006G184200 Sobic004G340100--Sobic006G184200 Sobic010G009600 Sobic010G009600 Sobic004G340100--Sobic010G009600 Sobic008G087200 Sobic008G087200 Sobic004G340100--Sobic008G087200 Sobic007G036800 Sobic007G036800 Sobic004G340100--Sobic007G036800 Sobic002G037600 Sobic002G037600 Sobic004G340100--Sobic002G037600 Sobic008G112100 Sobic008G112100 Sobic004G340100--Sobic008G112100 Sobic001G534400 Sobic001G534400 Sobic004G340100--Sobic001G534400 Sobic006G272300 Sobic006G272300 Sobic004G340100--Sobic006G272300 Sobic006G100266 Sobic006G100266 Sobic004G340100--Sobic006G100266 Sobic008G160600 Sobic008G160600 Sobic006G184200--Sobic008G160600 Sobic010G038900 Sobic010G038900 Sobic006G184200--Sobic010G038900 Sobic002G354800 Sobic002G354800 Sobic006G184200--Sobic002G354800 Sobic008G174500 Sobic008G174500 Sobic006G184200--Sobic008G174500 Sobic003G042200 Sobic003G042200 Sobic006G184200--Sobic003G042200 Sobic002G230400 Sobic002G230400 Sobic006G184200--Sobic002G230400 Sobic006G184200--Sobic008G087200 Sobic006G184200--Sobic010G009600 Sobic003G379900 Sobic003G379900 Sobic006G184200--Sobic003G379900 Sobic010G257500 Sobic010G257500 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic010G009600--Sobic008G160600 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic010G009600--Sobic006G184200 Sobic008G087200--Sobic002G274700 Sobic008G087200--Sobic006G100266 Sobic008G087200--Sobic010G009600 Sobic008G087200--Sobic001G534400 Sobic008G087200--Sobic010G038900 Sobic008G087200--Sobic006G272300 Sobic008G087200--Sobic006G184200 Sobic010G018900 Sobic010G018900 Sobic008G087200--Sobic010G018900 Sobic003G343200 Sobic003G343200 Sobic008G087200--Sobic003G343200 Sobic004G129500 Sobic004G129500 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G010200 Sobic007G010200 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic002G123600 Sobic002G123600 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic001G196800 Sobic001G196800 Sobic002G037600--Sobic001G196800 Sobic003G294900 Sobic003G294900 Sobic002G037600--Sobic003G294900 Sobic001G203800 Sobic001G203800 Sobic002G037600--Sobic001G203800 Sobic006G208200 Sobic006G208200 Sobic002G037600--Sobic006G208200 Sobic004G328100 Sobic004G328100 Sobic002G037600--Sobic004G328100 Sobic002G037600--Sobic006G272300 Sobic001G309200 Sobic001G309200 Sobic002G037600--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic002G037600--Sobic005G185200 Sobic003G270100 Sobic003G270100 Sobic002G037600--Sobic003G270100 Sobic009G054400 Sobic009G054400 Sobic008G112100--Sobic009G054400 Sobic003G397100 Sobic003G397100 Sobic008G112100--Sobic003G397100 Sobic008G112100--Sobic007G036800 Sobic008G112100--Sobic007G010200 Sobic001G433600 Sobic001G433600 Sobic008G112100--Sobic001G433600 Sobic008G112100--Sobic008G087200 Sobic008G112100--Sobic002G123600 Sobic004G293400 Sobic004G293400 Sobic008G112100--Sobic004G293400 Sobic001G381500 Sobic001G381500 Sobic008G112100--Sobic001G381500 Sobic001G534400--Sobic010G257500 Sobic001G534400--Sobic003G343200 Sobic001G534400--Sobic010G009600 Sobic001G534400--Sobic008G087200 Sobic004G014100 Sobic004G014100 Sobic001G534400--Sobic004G014100 Sobic005G160200 Sobic005G160200 Sobic001G534400--Sobic005G160200 Sobic001G534400--Sobic006G184200 Sobic001G534400--Sobic008G174500 Sobic002G271400 Sobic002G271400 Sobic001G534400--Sobic002G271400 Sobic006G272300--Sobic006G100266 Sobic006G272300--Sobic008G087200 Sobic001G131900 Sobic001G131900 Sobic006G272300--Sobic001G131900 Sobic006G272300--Sobic001G196800 Sobic006G272300--Sobic002G274700 Sobic006G272300--Sobic010G018900 Sobic006G272300--Sobic010G009600 Sobic003G293400 Sobic003G293400 Sobic006G272300--Sobic003G293400 Sobic001G188000 Sobic001G188000 Sobic006G272300--Sobic001G188000 Sobic003G255700 Sobic003G255700 Sobic006G100266--Sobic003G255700 Sobic003G308300 Sobic003G308300 Sobic006G100266--Sobic003G308300 Sobic001G305900 Sobic001G305900 Sobic006G100266--Sobic001G305900 Sobic006G100266--Sobic002G274700 Sobic006G100266--Sobic003G270100 Sobic006G100266--Sobic008G087200 Sobic002G322400 Sobic002G322400 Sobic006G100266--Sobic002G322400 Sobic009G186700 Sobic009G186700 Sobic006G100266--Sobic009G186700 Sobic006G100266--Sobic010G009600
Octagon: transcription factors


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