Gene annotation
Transcriptome id Sobic.003G148400.1
Synonym ATPME2, PME2, Sb03g012830
Functional annotation Pectinesterase 1 (Precursor) (PubMedID : 26186930)
pectinesterase, putative, expressed
UniProt C5XIT6
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF25
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT1G53830 : pectin methylesterase 2
RAP-DB (Rice) LOC_Os01g21034.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a024331 , Zm00025a030727
Brachypodium KQK04130
Barley HORVU3Hr1G091360.6 , HORVU3Hr1G091360.7 , HORVU3Hr1G091360.4 , HORVU3Hr1G091360.2 , HORVU3Hr1G091360.3 , HORVU3Hr1G091360.1 , HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3 , HORVU2Hr1G018710.2 , HORVU5Hr1G010860.4 , HORVU5Hr1G010860.5 , HORVU5Hr1G010860.6 , HORVU5Hr1G010860.7 , HORVU5Hr1G010860.1 , HORVU5Hr1G010860.2 , HORVU5Hr1G010860.3 , HORVU5Hr1G010860.8 , HORVU5Hr1G010860.9 , HORVU2Hr1G018710.4
Wheat TraesCS5A02G043800 , TraesCS2B02G127600 , TraesCS5B02G048000 , TraesCS5D02G053200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G379100 basic helix-loop-helix domain containing protein, expressed -
2 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
3 Sobic.004G253500 auxin-independent growth promoter protein, putative, expressed -
4 Sobic.001G164500 MYB family transcription factor, putative, expressed -
5 Sobic.010G096200 expressed protein -
6 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
7 Sobic.003G259500 - -
8 Sobic.009G002900 expressed protein -
9 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
10 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
11 Sobic.004G222300 DEF7 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
13 Sobic.006G157800 glycosyl transferase 8 domain containing protein, putative, expressed -
14 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
15 Sobic.001G461800 zinc finger family protein, putative, expressed -
16 Sobic.003G223100 polygalacturonase, putative, expressed -
17 Sobic.006G157100 sphingolipid delta desaturase, putative, expressed K04712: sphingolipid 4-desaturase/C4-monooxygenase
18 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
19 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
20 Sobic.009G151100 serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic003G148400 Sobic003G148400 Sobic001G379100 Sobic001G379100 Sobic003G148400--Sobic001G379100 Sobic003G250000 Sobic003G250000 Sobic003G148400--Sobic003G250000 Sobic004G253500 Sobic004G253500 Sobic003G148400--Sobic004G253500 Sobic001G164500 Sobic001G164500 Sobic003G148400--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic003G148400--Sobic010G096200 Sobic002G225000 Sobic002G225000 Sobic003G148400--Sobic002G225000 Sobic003G259500 Sobic003G259500 Sobic003G148400--Sobic003G259500 Sobic009G002900 Sobic009G002900 Sobic003G148400--Sobic009G002900 Sobic008G075200 Sobic008G075200 Sobic003G148400--Sobic008G075200 Sobic001G379100--Sobic001G164500 Sobic001G379100--Sobic010G096200 Sobic001G379100--Sobic003G148400 Sobic002G280500 Sobic002G280500 Sobic001G379100--Sobic002G280500 Sobic001G127700 Sobic001G127700 Sobic001G379100--Sobic001G127700 Sobic006G172700 Sobic006G172700 Sobic001G379100--Sobic006G172700 Sobic001G379100--Sobic002G225000 Sobic004G060700 Sobic004G060700 Sobic001G379100--Sobic004G060700 Sobic004G109000 Sobic004G109000 Sobic001G379100--Sobic004G109000 Sobic001G461800 Sobic001G461800 Sobic003G250000--Sobic001G461800 Sobic003G250000--Sobic004G253500 Sobic004G269100 Sobic004G269100 Sobic003G250000--Sobic004G269100 Sobic003G078300 Sobic003G078300 Sobic003G250000--Sobic003G078300 Sobic003G250000--Sobic009G002900 Sobic003G291000 Sobic003G291000 Sobic003G250000--Sobic003G291000 Sobic002G286700 Sobic002G286700 Sobic003G250000--Sobic002G286700 Sobic003G250000--Sobic003G259500 Sobic002G259200 Sobic002G259200 Sobic003G250000--Sobic002G259200 Sobic004G253500--Sobic003G078300 Sobic004G253500--Sobic001G461800 Sobic004G253500--Sobic003G250000 Sobic004G253500--Sobic003G259500 Sobic008G059900 Sobic008G059900 Sobic004G253500--Sobic008G059900 Sobic003G024000 Sobic003G024000 Sobic004G253500--Sobic003G024000 Sobic004G253500--Sobic009G002900 Sobic001G199500 Sobic001G199500 Sobic004G253500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic004G253500--Sobic003G102700 Sobic001G164500--Sobic001G379100 Sobic006G233600 Sobic006G233600 Sobic001G164500--Sobic006G233600 Sobic001G164500--Sobic010G096200 Sobic001G164500--Sobic002G280500 Sobic001G164500--Sobic003G148400 Sobic001G164500--Sobic004G109000 Sobic001G478100 Sobic001G478100 Sobic001G164500--Sobic001G478100 Sobic003G333700 Sobic003G333700 Sobic001G164500--Sobic003G333700 Sobic006G238100 Sobic006G238100 Sobic001G164500--Sobic006G238100 Sobic010G096200--Sobic001G379100 Sobic005G147800 Sobic005G147800 Sobic010G096200--Sobic005G147800 Sobic001G389600 Sobic001G389600 Sobic010G096200--Sobic001G389600 Sobic010G096200--Sobic001G164500 Sobic007G142300 Sobic007G142300 Sobic010G096200--Sobic007G142300 Sobic010G107200 Sobic010G107200 Sobic010G096200--Sobic010G107200 Sobic010G165100 Sobic010G165100 Sobic010G096200--Sobic010G165100 Sobic010G096200--Sobic006G233600 Sobic002G164700 Sobic002G164700 Sobic010G096200--Sobic002G164700 Sobic009G231100 Sobic009G231100 Sobic002G225000--Sobic009G231100 Sobic002G225000--Sobic003G078300 Sobic002G377300 Sobic002G377300 Sobic002G225000--Sobic002G377300 Sobic002G225000--Sobic001G379100 Sobic002G225000--Sobic010G165100 Sobic002G225000--Sobic003G148400 Sobic003G223000 Sobic003G223000 Sobic002G225000--Sobic003G223000 Sobic002G388600 Sobic002G388600 Sobic002G225000--Sobic002G388600 Sobic002G078000 Sobic002G078000 Sobic002G225000--Sobic002G078000 Sobic003G259500--Sobic004G253500 Sobic003G259500--Sobic003G250000 Sobic003G259500--Sobic003G078300 Sobic003G259500--Sobic003G333700 Sobic003G259500--Sobic009G002900 Sobic007G079600 Sobic007G079600 Sobic003G259500--Sobic007G079600 Sobic003G259500--Sobic003G148400 Sobic003G259500--Sobic001G461800 Sobic003G259500--Sobic002G078000 Sobic009G002900--Sobic003G250000 Sobic009G002900--Sobic003G078300 Sobic009G002900--Sobic004G253500 Sobic009G177200 Sobic009G177200 Sobic009G002900--Sobic009G177200 Sobic009G002900--Sobic003G223000 Sobic009G002900--Sobic001G461800 Sobic008G113300 Sobic008G113300 Sobic009G002900--Sobic008G113300 Sobic006G093200 Sobic006G093200 Sobic009G002900--Sobic006G093200 Sobic009G002900--Sobic001G199500 Sobic004G319800 Sobic004G319800 Sobic008G075200--Sobic004G319800 Sobic004G047400 Sobic004G047400 Sobic008G075200--Sobic004G047400 Sobic002G317600 Sobic002G317600 Sobic008G075200--Sobic002G317600 Sobic008G181400 Sobic008G181400 Sobic008G075200--Sobic008G181400 Sobic003G223100 Sobic003G223100 Sobic008G075200--Sobic003G223100 Sobic009G151100 Sobic009G151100 Sobic008G075200--Sobic009G151100 Sobic008G075200--Sobic009G231100 Sobic008G075200--Sobic009G002900 Sobic008G075200--Sobic004G253500
Octagon: transcription factors


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