Gene annotation
Transcriptome id Sobic.004G222300.1
Synonym PDF2.1, Sb04g026670, LCR70
Functional annotation DEF7 - Defensin and Defensin-like DEFL family, expressed
UniProt C5XXV4
Pfam PF00304
Panther DB PTHR33147 PTHR33147:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02120 : Scorpion toxin-like knottin superfamily protein
RAP-DB (Rice) LOC_Os02g41904.1 : DEF7 - Defensin and Defensin-like DEFL family, expressed
MaizeGDB (Corn) -
Brachypodium KQK00431
Barley -
Wheat TraesCS6A02G076800 , TraesCS6B02G102900 , TraesCS6B02G103000 , TraesCSU02G027100 , TraesCSU02G026600
Populus -


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cDNA sequences
Sobic.004G222300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G071300 pectinesterase, putative, expressed -
2 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
3 Sobic.005G047900 expressed protein -
4 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
6 Sobic.004G115000 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
8 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.004G215100 expressed protein -
10 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
11 Sobic.001G164500 MYB family transcription factor, putative, expressed -
12 Sobic.001G381000 - -
13 Sobic.003G055800 expressed protein -
14 Sobic.003G259500 - -
15 Sobic.009G119800 GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.001G166200 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
18 Sobic.005G147600 - -
19 Sobic.006G083900 PHD-finger domain containing protein, expressed -
20 Sobic.010G179300 - -


Gene co-expression network
sample Sobic004G222300 Sobic004G222300 Sobic010G071300 Sobic010G071300 Sobic004G222300--Sobic010G071300 Sobic005G102800 Sobic005G102800 Sobic004G222300--Sobic005G102800 Sobic005G047900 Sobic005G047900 Sobic004G222300--Sobic005G047900 Sobic004G269100 Sobic004G269100 Sobic004G222300--Sobic004G269100 Sobic001G448000 Sobic001G448000 Sobic004G222300--Sobic001G448000 Sobic004G115000 Sobic004G115000 Sobic004G222300--Sobic004G115000 Sobic003G250000 Sobic003G250000 Sobic004G222300--Sobic003G250000 Sobic003G148400 Sobic003G148400 Sobic004G222300--Sobic003G148400 Sobic004G215100 Sobic004G215100 Sobic004G222300--Sobic004G215100 Sobic010G071300--Sobic004G222300 Sobic006G069000 Sobic006G069000 Sobic010G071300--Sobic006G069000 Sobic010G071300--Sobic005G047900 Sobic010G071300--Sobic003G148400 Sobic010G071300--Sobic004G215100 Sobic001G164500 Sobic001G164500 Sobic010G071300--Sobic001G164500 Sobic001G379100 Sobic001G379100 Sobic010G071300--Sobic001G379100 Sobic002G280500 Sobic002G280500 Sobic010G071300--Sobic002G280500 Sobic003G055800 Sobic003G055800 Sobic010G071300--Sobic003G055800 Sobic003G102700 Sobic003G102700 Sobic005G102800--Sobic003G102700 Sobic007G192200 Sobic007G192200 Sobic005G102800--Sobic007G192200 Sobic005G102800--Sobic004G269100 Sobic006G226000 Sobic006G226000 Sobic005G102800--Sobic006G226000 Sobic009G119800 Sobic009G119800 Sobic005G102800--Sobic009G119800 Sobic003G140800 Sobic003G140800 Sobic005G102800--Sobic003G140800 Sobic001G381000 Sobic001G381000 Sobic005G102800--Sobic001G381000 Sobic004G244200 Sobic004G244200 Sobic005G102800--Sobic004G244200 Sobic009G031800 Sobic009G031800 Sobic005G102800--Sobic009G031800 Sobic005G047900--Sobic004G222300 Sobic005G047900--Sobic009G119800 Sobic004G134801 Sobic004G134801 Sobic005G047900--Sobic004G134801 Sobic005G147600 Sobic005G147600 Sobic005G047900--Sobic005G147600 Sobic002G366300 Sobic002G366300 Sobic005G047900--Sobic002G366300 Sobic005G047900--Sobic005G102800 Sobic006G083900 Sobic006G083900 Sobic005G047900--Sobic006G083900 Sobic005G047900--Sobic001G381000 Sobic001G122600 Sobic001G122600 Sobic005G047900--Sobic001G122600 Sobic008G052300 Sobic008G052300 Sobic004G269100--Sobic008G052300 Sobic002G259200 Sobic002G259200 Sobic004G269100--Sobic002G259200 Sobic003G251700 Sobic003G251700 Sobic004G269100--Sobic003G251700 Sobic005G092700 Sobic005G092700 Sobic004G269100--Sobic005G092700 Sobic005G153000 Sobic005G153000 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic004G269100--Sobic003G055800 Sobic004G139900 Sobic004G139900 Sobic001G448000--Sobic004G139900 Sobic009G200000 Sobic009G200000 Sobic001G448000--Sobic009G200000 Sobic007G097100 Sobic007G097100 Sobic001G448000--Sobic007G097100 Sobic008G042200 Sobic008G042200 Sobic001G448000--Sobic008G042200 Sobic004G115700 Sobic004G115700 Sobic001G448000--Sobic004G115700 Sobic001G448000--Sobic004G269100 Sobic001G448000--Sobic004G215100 Sobic008G123200 Sobic008G123200 Sobic001G448000--Sobic008G123200 Sobic001G448000--Sobic005G092700 Sobic004G115000--Sobic004G222300 Sobic004G115000--Sobic001G164500 Sobic003G333700 Sobic003G333700 Sobic004G115000--Sobic003G333700 Sobic003G259500 Sobic003G259500 Sobic004G115000--Sobic003G259500 Sobic004G115000--Sobic005G102800 Sobic004G115000--Sobic005G047900 Sobic004G115000--Sobic010G071300 Sobic004G115000--Sobic003G250000 Sobic004G115000--Sobic001G379100 Sobic003G250000--Sobic001G461800 Sobic004G253500 Sobic004G253500 Sobic003G250000--Sobic004G253500 Sobic003G250000--Sobic004G269100 Sobic003G078300 Sobic003G078300 Sobic003G250000--Sobic003G078300 Sobic009G002900 Sobic009G002900 Sobic003G250000--Sobic009G002900 Sobic003G291000 Sobic003G291000 Sobic003G250000--Sobic003G291000 Sobic002G286700 Sobic002G286700 Sobic003G250000--Sobic002G286700 Sobic003G250000--Sobic003G259500 Sobic003G250000--Sobic002G259200 Sobic003G148400--Sobic001G379100 Sobic003G148400--Sobic003G250000 Sobic003G148400--Sobic004G253500 Sobic003G148400--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic003G148400--Sobic010G096200 Sobic002G225000 Sobic002G225000 Sobic003G148400--Sobic002G225000 Sobic003G148400--Sobic003G259500 Sobic003G148400--Sobic009G002900 Sobic008G075200 Sobic008G075200 Sobic003G148400--Sobic008G075200 Sobic004G215100--Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic004G215100--Sobic006G172000 Sobic004G215100--Sobic004G115700 Sobic004G215100--Sobic004G269100 Sobic001G493100 Sobic001G493100 Sobic004G215100--Sobic001G493100 Sobic004G215100--Sobic001G448000 Sobic004G215100--Sobic007G097100 Sobic002G378600 Sobic002G378600 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100
Octagon: transcription factors


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