Gene annotation
Transcriptome id Sobic.002G360200.1
Synonym Sb02g038080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6QFB9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF308
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02860 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g40120.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a048606
Brachypodium KQK15454
Barley HORVU2Hr1G035060.2 , HORVU2Hr1G035060.1
Wheat TraesCS2B02G212000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
2 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
3 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
4 Sobic.004G253800 - -
5 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
7 Sobic.006G114300 pentatricopeptide, putative, expressed -
8 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
9 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
10 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
11 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
12 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
14 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
15 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
16 Sobic.002G306201 - -
17 Sobic.001G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 2, putative, expressed -
18 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
19 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
20 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase


Gene co-expression network
sample Sobic002G360200 Sobic002G360200 Sobic001G172300 Sobic001G172300 Sobic002G360200--Sobic001G172300 Sobic010G012900 Sobic010G012900 Sobic002G360200--Sobic010G012900 Sobic001G013900 Sobic001G013900 Sobic002G360200--Sobic001G013900 Sobic004G253800 Sobic004G253800 Sobic002G360200--Sobic004G253800 Sobic001G188600 Sobic001G188600 Sobic002G360200--Sobic001G188600 Sobic010G011200 Sobic010G011200 Sobic002G360200--Sobic010G011200 Sobic006G114300 Sobic006G114300 Sobic002G360200--Sobic006G114300 Sobic002G078000 Sobic002G078000 Sobic002G360200--Sobic002G078000 Sobic001G357200 Sobic001G357200 Sobic002G360200--Sobic001G357200 Sobic001G172300--Sobic010G012900 Sobic001G347800 Sobic001G347800 Sobic001G172300--Sobic001G347800 Sobic003G392000 Sobic003G392000 Sobic001G172300--Sobic003G392000 Sobic001G172300--Sobic001G188600 Sobic002G190800 Sobic002G190800 Sobic001G172300--Sobic002G190800 Sobic001G172300--Sobic006G114300 Sobic001G172300--Sobic002G360200 Sobic001G172300--Sobic001G357200 Sobic001G172300--Sobic004G253800 Sobic010G012900--Sobic001G188600 Sobic010G012900--Sobic001G357200 Sobic010G012900--Sobic010G011200 Sobic001G383900 Sobic001G383900 Sobic010G012900--Sobic001G383900 Sobic010G012900--Sobic001G172300 Sobic007G034500 Sobic007G034500 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic010G012900--Sobic006G114300 Sobic009G098100 Sobic009G098100 Sobic010G012900--Sobic009G098100 Sobic001G013900--Sobic002G360200 Sobic001G013900--Sobic002G078000 Sobic003G333700 Sobic003G333700 Sobic001G013900--Sobic003G333700 Sobic002G272400 Sobic002G272400 Sobic001G013900--Sobic002G272400 Sobic001G104300 Sobic001G104300 Sobic001G013900--Sobic001G104300 Sobic001G013900--Sobic001G188600 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic005G200600 Sobic005G200600 Sobic004G253800--Sobic005G200600 Sobic003G157500 Sobic003G157500 Sobic004G253800--Sobic003G157500 Sobic005G020200 Sobic005G020200 Sobic004G253800--Sobic005G020200 Sobic004G253800--Sobic001G188600 Sobic006G025700 Sobic006G025700 Sobic004G253800--Sobic006G025700 Sobic009G059100 Sobic009G059100 Sobic004G253800--Sobic009G059100 Sobic009G001500 Sobic009G001500 Sobic004G253800--Sobic009G001500 Sobic004G253800--Sobic001G357200 Sobic004G253800--Sobic006G114300 Sobic001G069500 Sobic001G069500 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic001G188600--Sobic004G109000 Sobic007G211100 Sobic007G211100 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic005G110481 Sobic005G110481 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic002G013700 Sobic002G013700 Sobic010G011200--Sobic002G013700 Sobic010G011200--Sobic009G001500 Sobic010G011200--Sobic001G383900 Sobic009G104700 Sobic009G104700 Sobic010G011200--Sobic009G104700 Sobic010G011200--Sobic009G098100 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic007G013400 Sobic007G013400 Sobic006G114300--Sobic007G013400 Sobic002G078000--Sobic001G013900 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G078000--Sobic002G360200 Sobic002G078000--Sobic001G188600 Sobic002G078000--Sobic010G012900 Sobic002G078000--Sobic004G109000 Sobic001G357200--Sobic001G188600 Sobic001G357200--Sobic006G114300 Sobic001G357200--Sobic010G012900 Sobic001G357200--Sobic009G001500 Sobic001G357200--Sobic008G030000 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic001G357200--Sobic003G383500
Octagon: transcription factors


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