Hb_063804_010

Information

Type -
Description -
Location Contig63804: 3-1445
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063804_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000100_100 0.1776242694 - - hypothetical protein VITISV_027675 [Vitis vinifera]
3 Hb_000100_160 0.1833298849 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
4 Hb_000100_180 0.1849994762 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
5 Hb_001677_060 0.1881933044 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
6 Hb_001049_090 0.1956074983 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
7 Hb_000815_130 0.1987955771 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
8 Hb_006921_030 0.208076043 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
9 Hb_000007_450 0.2106991745 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
10 Hb_002054_040 0.2108757999 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
11 Hb_011030_010 0.2134948932 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_000510_200 0.2135264862 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_148121_080 0.214817025 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
14 Hb_001322_190 0.2150172141 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
15 Hb_000264_170 0.2150303732 - - PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
16 Hb_000544_090 0.2157291631 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
17 Hb_000229_030 0.2170486341 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
18 Hb_001227_060 0.2174833572 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
19 Hb_002024_010 0.2184843069 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
20 Hb_003780_070 0.2203161233 - - PREDICTED: pirin-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_063804_010 Hb_063804_010 Hb_000100_100 Hb_000100_100 Hb_063804_010--Hb_000100_100 Hb_000100_160 Hb_000100_160 Hb_063804_010--Hb_000100_160 Hb_000100_180 Hb_000100_180 Hb_063804_010--Hb_000100_180 Hb_001677_060 Hb_001677_060 Hb_063804_010--Hb_001677_060 Hb_001049_090 Hb_001049_090 Hb_063804_010--Hb_001049_090 Hb_000815_130 Hb_000815_130 Hb_063804_010--Hb_000815_130 Hb_000264_170 Hb_000264_170 Hb_000100_100--Hb_000264_170 Hb_000699_140 Hb_000699_140 Hb_000100_100--Hb_000699_140 Hb_001100_050 Hb_001100_050 Hb_000100_100--Hb_001100_050 Hb_000020_190 Hb_000020_190 Hb_000100_100--Hb_000020_190 Hb_000723_130 Hb_000723_130 Hb_000100_100--Hb_000723_130 Hb_000166_110 Hb_000166_110 Hb_000100_100--Hb_000166_110 Hb_000100_160--Hb_000100_180 Hb_004545_090 Hb_004545_090 Hb_000100_160--Hb_004545_090 Hb_002493_020 Hb_002493_020 Hb_000100_160--Hb_002493_020 Hb_000007_450 Hb_000007_450 Hb_000100_160--Hb_000007_450 Hb_001329_140 Hb_001329_140 Hb_000100_160--Hb_001329_140 Hb_004224_020 Hb_004224_020 Hb_000100_160--Hb_004224_020 Hb_000544_090 Hb_000544_090 Hb_000100_180--Hb_000544_090 Hb_023480_010 Hb_023480_010 Hb_000100_180--Hb_023480_010 Hb_002022_060 Hb_002022_060 Hb_000100_180--Hb_002022_060 Hb_000100_180--Hb_001049_090 Hb_007441_130 Hb_007441_130 Hb_000100_180--Hb_007441_130 Hb_006921_030 Hb_006921_030 Hb_001677_060--Hb_006921_030 Hb_001677_060--Hb_000166_110 Hb_008085_010 Hb_008085_010 Hb_001677_060--Hb_008085_010 Hb_020000_020 Hb_020000_020 Hb_001677_060--Hb_020000_020 Hb_005539_220 Hb_005539_220 Hb_001677_060--Hb_005539_220 Hb_003766_040 Hb_003766_040 Hb_001677_060--Hb_003766_040 Hb_000202_040 Hb_000202_040 Hb_001049_090--Hb_000202_040 Hb_001227_060 Hb_001227_060 Hb_001049_090--Hb_001227_060 Hb_000363_240 Hb_000363_240 Hb_001049_090--Hb_000363_240 Hb_011129_040 Hb_011129_040 Hb_001049_090--Hb_011129_040 Hb_000050_190 Hb_000050_190 Hb_001049_090--Hb_000050_190 Hb_011344_160 Hb_011344_160 Hb_000815_130--Hb_011344_160 Hb_000815_130--Hb_000100_180 Hb_003582_080 Hb_003582_080 Hb_000815_130--Hb_003582_080 Hb_003050_270 Hb_003050_270 Hb_000815_130--Hb_003050_270 Hb_001511_240 Hb_001511_240 Hb_000815_130--Hb_001511_240 Hb_000172_540 Hb_000172_540 Hb_000815_130--Hb_000172_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08853 0.729107 0.293358 0.387082 0.0708574 1.77693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0777 0.35969 0.963939 1.01583 1.01954

CAGE analysis