Hb_006921_030

Information

Type -
Description -
Location Contig6921: 56176-58671
Sequence    

Annotation

kegg
ID rcu:RCOM_0803050
description hypothetical protein
nr
ID XP_012077450.1
description PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
swissprot
ID P96617
description Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1
trembl
ID A0A067KGX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07784 PE=4 SV=1
Gene Ontology
ID GO:0009706
description rhomboid protease ydca

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54468: 56363-56512 , PASA_asmbl_54469: 56860-58623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006921_030 0.0 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
2 Hb_039837_010 0.0778551356 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
3 Hb_000166_110 0.0906495721 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
4 Hb_001677_060 0.0932427679 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
5 Hb_002054_040 0.0995864159 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
6 Hb_011689_020 0.1003456076 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000699_140 0.1010070582 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_000284_110 0.1021077255 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
9 Hb_004204_020 0.1024752601 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
10 Hb_002811_360 0.10437097 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_008085_010 0.1063179999 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
12 Hb_005883_050 0.1069491958 - - PREDICTED: transportin-3 [Jatropha curcas]
13 Hb_000703_220 0.1075288375 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
14 Hb_003766_040 0.1100733398 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_071736_010 0.1101341176 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
16 Hb_039946_020 0.1110233972 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002982_040 0.1114396738 - - mta/sah nucleosidase, putative [Ricinus communis]
18 Hb_002196_020 0.111587156 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_006332_010 0.1117694857 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
20 Hb_148644_010 0.1122270692 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006921_030 Hb_006921_030 Hb_039837_010 Hb_039837_010 Hb_006921_030--Hb_039837_010 Hb_000166_110 Hb_000166_110 Hb_006921_030--Hb_000166_110 Hb_001677_060 Hb_001677_060 Hb_006921_030--Hb_001677_060 Hb_002054_040 Hb_002054_040 Hb_006921_030--Hb_002054_040 Hb_011689_020 Hb_011689_020 Hb_006921_030--Hb_011689_020 Hb_000699_140 Hb_000699_140 Hb_006921_030--Hb_000699_140 Hb_002811_360 Hb_002811_360 Hb_039837_010--Hb_002811_360 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_001677_060--Hb_000166_110 Hb_008085_010 Hb_008085_010 Hb_001677_060--Hb_008085_010 Hb_020000_020 Hb_020000_020 Hb_001677_060--Hb_020000_020 Hb_005539_220 Hb_005539_220 Hb_001677_060--Hb_005539_220 Hb_003766_040 Hb_003766_040 Hb_001677_060--Hb_003766_040 Hb_000031_220 Hb_000031_220 Hb_002054_040--Hb_000031_220 Hb_000260_220 Hb_000260_220 Hb_002054_040--Hb_000260_220 Hb_002374_050 Hb_002374_050 Hb_002054_040--Hb_002374_050 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002982_040 Hb_002982_040 Hb_002054_040--Hb_002982_040 Hb_011689_020--Hb_005839_060 Hb_002805_070 Hb_002805_070 Hb_011689_020--Hb_002805_070 Hb_000703_220 Hb_000703_220 Hb_011689_020--Hb_000703_220 Hb_000284_110 Hb_000284_110 Hb_011689_020--Hb_000284_110 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1733 4.55488 2.71825 6.12938 5.38857 16.6532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.0666 8.12305 10.1055 7.54916 3.70985

CAGE analysis